Information for 18-CTRBRCTR (Motif 17)

T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A
Reverse Opposite:
A G C T T G C A C A T G A G T C T G C A G A C T T G C A A T C G
p-value:1e-15
log p-value:-3.528e+01
Information Content per bp:1.586
Number of Target Sequences with motif1277.0
Percentage of Target Sequences with motif35.81%
Number of Background Sequences with motif11469.0
Percentage of Background Sequences with motif29.55%
Average Position of motif in Targets101.5 +/- 54.9bp
Average Position of motif in Background100.5 +/- 69.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.64
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA1/MA0035.4/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTRBRCTR-
TTCTAATCTAT
 A C G T A C G T T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A A C G T
C G A T G C A T G T A C C G A T C G T A G C T A G C A T G T A C G C A T C G T A G C A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTRBRCTR-
-TWGTCTGV
 T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTRBRCTR--
----GCTGTG
 T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

ZSCAN29/MA1602.1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTRBRCTR-
CGTCTACACGGG
 A C G T A C G T A C G T T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A A C G T
A G T C C T A G A G C T G T A C A G C T G C T A G A T C C T G A A T G C T C A G C T A G T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTRBRCTR
---NGCTN
 T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTRBRCTR----
NNHYTGACCTAGWTT
 A C G T A C G T A C G T T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A A C G T A C G T A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTRBRCTR--
CTGTTCCTGG
 T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A A C G T A C G T
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTRBRCTR-
-TGACCTYA
 T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A A C G T
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CTRBRCTR
NNACTTGCCTT
 A C G T A C G T A C G T T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTRBRCTR----
BTGACCTAVTTW
 T A G C A C G T C T G A A C G T T C A G G T A C A C G T T C G A A C G T A C G T A C G T A C G T
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T