Information for 17-RAGAACGC (Motif 12)

T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C
Reverse Opposite:
T C A G A G T C A C T G A C G T G C A T A G T C A G C T A G C T
p-value:1e-190
log p-value:-4.395e+02
Information Content per bp:1.703
Number of Target Sequences with motif6718.0
Percentage of Target Sequences with motif10.41%
Number of Background Sequences with motif4474.2
Percentage of Background Sequences with motif7.22%
Average Position of motif in Targets100.2 +/- 53.8bp
Average Position of motif in Background99.7 +/- 64.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0094.1_Zfp128_1/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---RAGAACGC------
TTNGGGTACGCCNNANN
 A C G T A C G T A C G T T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

HIF1A/MA1106.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:RAGAACGC--
NNGCACGTNC
 T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C A C G T A C G T
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:RAGAACGC-
-BGCACGTA
 T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C A C G T
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:RAGAACGC--
--GCACGTNC
 T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:RAGAACGC--
--GCACGTAY
 T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C A C G T A C G T
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:6
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------RAGAACGC-
TATCATTAGAACGCT
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C A C G T
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

Gmeb1/MA0615.1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---RAGAACGC------
NNNTNGTACGTAANNNN
 A C G T A C G T A C G T T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

PB0027.1_Gmeb1_1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---RAGAACGC------
NNNTNGTACGTAANNNN
 A C G T A C G T A C G T T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

HINFP/MA0131.2/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--RAGAACGC--
NCGCGGACGTTG
 A C G T A C G T T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C A C G T A C G T
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:RAGAACGC--
TBGCACGCAA
 T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C A C G T A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A