Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 64557)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 61978)	% of Background Sequences with Motif
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-6972	-1.606e+04	0.0000	29425.0	45.58%	9705.8	15.66%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-6845	-1.576e+04	0.0000	32552.0	50.42%	11921.1	19.23%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-6815	-1.569e+04	0.0000	29533.0	45.75%	9930.3	16.02%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-5633	-1.297e+04	0.0000	22881.0	35.44%	6984.2	11.27%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-5290	-1.218e+04	0.0000	9296.0	14.40%	1059.2	1.71%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-5037	-1.160e+04	0.0000	9637.0	14.93%	1241.9	2.00%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-4881	-1.124e+04	0.0000	22607.0	35.02%	7553.4	12.18%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-4499	-1.036e+04	0.0000	6783.0	10.51%	597.7	0.96%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-4430	-1.020e+04	0.0000	13081.0	20.26%	2843.7	4.59%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-4361	-1.004e+04	0.0000	7538.0	11.68%	827.8	1.34%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-4229	-9.738e+03	0.0000	9876.0	15.30%	1637.4	2.64%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-3898	-8.976e+03	0.0000	29974.0	46.43%	13928.7	22.47%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3057	-7.039e+03	0.0000	20751.0	32.14%	8573.5	13.83%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-3040	-7.001e+03	0.0000	22203.0	34.39%	9596.1	15.48%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-2939	-6.768e+03	0.0000	21857.0	33.86%	9510.9	15.34%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2731	-6.290e+03	0.0000	17658.0	27.35%	6982.5	11.26%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2473	-5.695e+03	0.0000	11851.0	18.36%	3779.3	6.10%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-2273	-5.235e+03	0.0000	18308.0	28.36%	8106.6	13.08%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2204	-5.076e+03	0.0000	13570.0	21.02%	5102.6	8.23%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1646	-3.792e+03	0.0000	34068.0	52.77%	22286.5	35.95%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1366	-3.147e+03	0.0000	23327.0	36.13%	13863.7	22.36%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-864	-1.991e+03	0.0000	2134.0	3.31%	358.5	0.58%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-856	-1.972e+03	0.0000	15871.0	24.58%	9363.0	15.10%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-707	-1.629e+03	0.0000	4254.0	6.59%	1502.8	2.42%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-699	-1.610e+03	0.0000	15512.0	24.03%	9574.5	15.44%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-443	-1.021e+03	0.0000	20548.0	31.83%	14878.9	24.00%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-387	-8.923e+02	0.0000	3612.0	5.59%	1593.5	2.57%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-359	-8.283e+02	0.0000	9183.0	14.22%	5744.5	9.27%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-331	-7.624e+02	0.0000	28793.0	44.60%	23005.7	37.11%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-287	-6.618e+02	0.0000	12368.0	19.16%	8665.3	13.98%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-270	-6.235e+02	0.0000	4219.0	6.54%	2267.8	3.66%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-266	-6.142e+02	0.0000	25826.0	40.00%	20721.9	33.43%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-265	-6.110e+02	0.0000	10674.0	16.53%	7360.5	11.87%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-257	-5.923e+02	0.0000	26652.0	41.28%	21556.6	34.77%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-245	-5.647e+02	0.0000	12602.0	19.52%	9091.8	14.67%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-220	-5.079e+02	0.0000	7773.0	12.04%	5191.4	8.37%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-198	-4.560e+02	0.0000	9192.0	14.24%	6474.7	10.44%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-171	-3.950e+02	0.0000	9775.0	15.14%	7119.7	11.49%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-163	-3.771e+02	0.0000	6046.0	9.37%	4058.5	6.55%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-159	-3.666e+02	0.0000	1169.0	1.81%	456.5	0.74%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-157	-3.626e+02	0.0000	6043.0	9.36%	4086.5	6.59%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-155	-3.581e+02	0.0000	5855.0	9.07%	3943.6	6.36%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-154	-3.554e+02	0.0000	2506.0	3.88%	1358.8	2.19%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-152	-3.522e+02	0.0000	6943.0	10.75%	4848.9	7.82%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-150	-3.466e+02	0.0000	1881.0	2.91%	930.7	1.50%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-146	-3.370e+02	0.0000	3682.0	5.70%	2261.1	3.65%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-140	-3.233e+02	0.0000	26105.0	40.44%	22087.1	35.63%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-134	-3.093e+02	0.0000	10810.0	16.74%	8262.5	13.33%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-127	-2.934e+02	0.0000	4521.0	7.00%	3001.4	4.84%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-127	-2.933e+02	0.0000	5747.0	8.90%	3999.3	6.45%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-123	-2.838e+02	0.0000	5150.0	7.98%	3531.1	5.70%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-122	-2.827e+02	0.0000	4288.0	6.64%	2836.5	4.58%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-121	-2.803e+02	0.0000	4772.0	7.39%	3231.4	5.21%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-121	-2.795e+02	0.0000	6946.0	10.76%	5034.3	8.12%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-121	-2.792e+02	0.0000	6395.0	9.91%	4572.3	7.38%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-114	-2.635e+02	0.0000	12826.0	19.87%	10201.6	16.46%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-113	-2.610e+02	0.0000	4304.0	6.67%	2894.6	4.67%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-112	-2.592e+02	0.0000	5140.0	7.96%	3580.9	5.78%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-110	-2.548e+02	0.0000	5063.0	7.84%	3527.5	5.69%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-110	-2.542e+02	0.0000	10344.0	16.02%	8041.3	12.97%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-109	-2.515e+02	0.0000	5125.0	7.94%	3586.1	5.78%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-107	-2.474e+02	0.0000	6404.0	9.92%	4665.8	7.53%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-106	-2.451e+02	0.0000	6171.0	9.56%	4475.4	7.22%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-105	-2.432e+02	0.0000	8910.0	13.80%	6827.8	11.01%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-104	-2.416e+02	0.0000	14501.0	22.46%	11791.0	19.02%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-104	-2.414e+02	0.0000	3486.0	5.40%	2279.8	3.68%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-104	-2.401e+02	0.0000	14325.0	22.19%	11639.3	18.78%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-101	-2.330e+02	0.0000	7403.0	11.47%	5558.8	8.97%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-98	-2.268e+02	0.0000	7974.0	12.35%	6070.1	9.79%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-97	-2.247e+02	0.0000	19216.0	29.77%	16168.8	26.08%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-93	-2.161e+02	0.0000	2723.0	4.22%	1726.2	2.78%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-91	-2.117e+02	0.0000	2415.0	3.74%	1495.5	2.41%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-88	-2.046e+02	0.0000	15750.0	24.40%	13093.0	21.12%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-86	-2.002e+02	0.0000	1458.0	2.26%	797.1	1.29%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-86	-1.985e+02	0.0000	7877.0	12.20%	6083.4	9.81%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-85	-1.980e+02	0.0000	5325.0	8.25%	3894.0	6.28%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-85	-1.977e+02	0.0000	6380.0	9.88%	4792.7	7.73%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-84	-1.955e+02	0.0000	5481.0	8.49%	4033.8	6.51%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-83	-1.915e+02	0.0000	9282.0	14.38%	7341.7	11.84%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-82	-1.893e+02	0.0000	14008.0	21.70%	11583.3	18.69%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-77	-1.787e+02	0.0000	1873.0	2.90%	1135.3	1.83%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-76	-1.762e+02	0.0000	6554.0	10.15%	5013.8	8.09%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-71	-1.642e+02	0.0000	9393.0	14.55%	7552.9	12.18%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-69	-1.593e+02	0.0000	27087.0	41.96%	23904.5	38.56%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-66	-1.523e+02	0.0000	6482.0	10.04%	5036.3	8.12%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-65	-1.505e+02	0.0000	25037.0	38.78%	22027.1	35.53%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-64	-1.485e+02	0.0000	1862.0	2.88%	1178.1	1.90%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-64	-1.477e+02	0.0000	15013.0	23.25%	12717.1	20.51%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-62	-1.446e+02	0.0000	15474.0	23.97%	13158.1	21.23%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-62	-1.443e+02	0.0000	4750.0	7.36%	3569.8	5.76%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-62	-1.428e+02	0.0000	3093.0	4.79%	2180.1	3.52%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-58	-1.343e+02	0.0000	2752.0	4.26%	1921.1	3.10%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-52	-1.205e+02	0.0000	2713.0	4.20%	1924.3	3.10%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-50	-1.173e+02	0.0000	2675.0	4.14%	1901.3	3.07%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-50	-1.157e+02	0.0000	4392.0	6.80%	3359.0	5.42%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-47	-1.103e+02	0.0000	6835.0	10.59%	5520.4	8.91%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-47	-1.093e+02	0.0000	2067.0	3.20%	1422.8	2.30%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-47	-1.088e+02	0.0000	6473.0	10.03%	5206.4	8.40%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-47	-1.085e+02	0.0000	586.0	0.91%	291.0	0.47%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-44	-1.025e+02	0.0000	784.0	1.21%	436.5	0.70%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-43	-9.904e+01	0.0000	5146.0	7.97%	4079.1	6.58%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-42	-9.806e+01	0.0000	5337.0	8.27%	4251.7	6.86%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-42	-9.792e+01	0.0000	4925.0	7.63%	3890.2	6.28%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-41	-9.602e+01	0.0000	3336.0	5.17%	2521.4	4.07%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-41	-9.548e+01	0.0000	1502.0	2.33%	998.1	1.61%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-40	-9.374e+01	0.0000	6102.0	9.45%	4947.1	7.98%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-38	-8.839e+01	0.0000	513.0	0.79%	261.0	0.42%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-38	-8.809e+01	0.0000	5009.0	7.76%	4006.6	6.46%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-37	-8.648e+01	0.0000	523.0	0.81%	270.0	0.44%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-37	-8.563e+01	0.0000	5583.0	8.65%	4525.1	7.30%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-36	-8.419e+01	0.0000	4326.0	6.70%	3423.1	5.52%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-35	-8.273e+01	0.0000	8418.0	13.04%	7086.8	11.43%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-35	-8.116e+01	0.0000	3226.0	5.00%	2479.0	4.00%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-35	-8.077e+01	0.0000	459.0	0.71%	232.5	0.38%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-33	-7.748e+01	0.0000	3470.0	5.37%	2704.7	4.36%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-33	-7.716e+01	0.0000	1703.0	2.64%	1204.2	1.94%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-33	-7.626e+01	0.0000	1010.0	1.56%	648.0	1.05%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-31	-7.315e+01	0.0000	659.0	1.02%	385.9	0.62%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-31	-7.291e+01	0.0000	724.0	1.12%	434.0	0.70%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-31	-7.161e+01	0.0000	4340.0	6.72%	3491.3	5.63%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-31	-7.159e+01	0.0000	9787.0	15.16%	8406.9	13.56%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-29	-6.774e+01	0.0000	2768.0	4.29%	2134.8	3.44%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-29	-6.755e+01	0.0000	4641.0	7.19%	3777.7	6.09%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-28	-6.582e+01	0.0000	395.0	0.61%	204.9	0.33%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-28	-6.489e+01	0.0000	1109.0	1.72%	750.7	1.21%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-28	-6.453e+01	0.0000	4508.0	6.98%	3674.7	5.93%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-28	-6.451e+01	0.0000	2170.0	3.36%	1633.9	2.64%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-27	-6.365e+01	0.0000	5763.0	8.93%	4801.4	7.75%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-26	-6.107e+01	0.0000	5504.0	8.53%	4583.1	7.39%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-26	-6.091e+01	0.0000	8835.0	13.69%	7610.4	12.28%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-25	-5.904e+01	0.0000	19539.0	30.27%	17592.9	28.38%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-25	-5.890e+01	0.0000	2772.0	4.29%	2172.2	3.50%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-24	-5.713e+01	0.0000	2644.0	4.10%	2068.4	3.34%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-24	-5.693e+01	0.0000	11154.0	17.28%	9777.6	15.77%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-24	-5.611e+01	0.0000	5395.0	8.36%	4514.9	7.28%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-24	-5.576e+01	0.0000	17709.0	27.43%	15904.2	25.66%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-24	-5.554e+01	0.0000	3841.0	5.95%	3127.8	5.05%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-23	-5.352e+01	0.0000	1573.0	2.44%	1163.7	1.88%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-22	-5.211e+01	0.0000	8560.0	13.26%	7424.6	11.98%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-21	-5.005e+01	0.0000	18772.0	29.08%	16965.2	27.37%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-21	-4.864e+01	0.0000	2684.0	4.16%	2139.2	3.45%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-20	-4.737e+01	0.0000	1309.0	2.03%	960.4	1.55%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-20	-4.714e+01	0.0000	2362.0	3.66%	1864.2	3.01%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-20	-4.668e+01	0.0000	3746.0	5.80%	3089.2	4.98%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-19	-4.415e+01	0.0000	2532.0	3.92%	2026.3	3.27%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-19	-4.398e+01	0.0000	1199.0	1.86%	878.6	1.42%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-18	-4.279e+01	0.0000	3304.0	5.12%	2716.9	4.38%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-17	-4.018e+01	0.0000	5657.0	8.76%	4857.5	7.84%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-17	-3.982e+01	0.0000	8260.0	12.79%	7250.9	11.70%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-16	-3.913e+01	0.0000	3653.0	5.66%	3050.0	4.92%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-16	-3.843e+01	0.0000	5692.0	8.82%	4902.6	7.91%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-16	-3.816e+01	0.0000	1639.0	2.54%	1273.5	2.05%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-15	-3.669e+01	0.0000	2166.0	3.36%	1739.5	2.81%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-15	-3.639e+01	0.0000	9232.0	14.30%	8182.1	13.20%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-15	-3.568e+01	0.0000	3706.0	5.74%	3118.5	5.03%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-15	-3.539e+01	0.0000	23760.0	36.80%	21873.9	35.29%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-14	-3.365e+01	0.0000	8680.0	13.45%	7697.6	12.42%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-14	-3.339e+01	0.0000	2655.0	4.11%	2190.0	3.53%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-14	-3.257e+01	0.0000	709.0	1.10%	503.2	0.81%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-14	-3.257e+01	0.0000	709.0	1.10%	503.2	0.81%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-13	-3.099e+01	0.0000	5065.0	7.85%	4387.9	7.08%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-12	-2.848e+01	0.0000	67.0	0.10%	23.7	0.04%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-12	-2.845e+01	0.0000	1357.0	2.10%	1068.3	1.72%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-11	-2.673e+01	0.0000	308.0	0.48%	194.7	0.31%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-11	-2.590e+01	0.0000	8256.0	12.79%	7385.1	11.91%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-11	-2.581e+01	0.0000	840.0	1.30%	633.5	1.02%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-11	-2.574e+01	0.0000	6326.0	9.80%	5595.8	9.03%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-11	-2.570e+01	0.0000	592.0	0.92%	425.8	0.69%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-11	-2.557e+01	0.0000	1070.0	1.66%	831.4	1.34%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-10	-2.464e+01	0.0000	10414.0	16.13%	9416.5	15.19%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-10	-2.448e+01	0.0000	10766.0	16.68%	9748.5	15.73%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-10	-2.424e+01	0.0000	3377.0	5.23%	2899.5	4.68%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-10	-2.361e+01	0.0000	521.0	0.81%	372.8	0.60%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-9	-2.133e+01	0.0000	3225.0	5.00%	2783.2	4.49%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-9	-2.083e+01	0.0000	97.0	0.15%	47.4	0.08%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-8	-2.065e+01	0.0000	1709.0	2.65%	1417.3	2.29%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-8	-1.976e+01	0.0000	5681.0	8.80%	5060.3	8.16%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-8	-1.870e+01	0.0000	11213.0	17.37%	10251.0	16.54%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-7	-1.789e+01	0.0000	8000.0	12.39%	7245.6	11.69%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-7	-1.748e+01	0.0000	2307.0	3.57%	1977.3	3.19%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-7	-1.671e+01	0.0000	2394.0	3.71%	2062.6	3.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-7	-1.669e+01	0.0000	3992.0	6.18%	3529.7	5.69%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-7	-1.655e+01	0.0000	283.0	0.44%	195.8	0.32%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-7	-1.631e+01	0.0000	1698.0	2.63%	1434.5	2.31%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-6	-1.604e+01	0.0000	701.0	1.09%	550.1	0.89%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-6	-1.561e+01	0.0000	4886.0	7.57%	4369.8	7.05%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-6	-1.494e+01	0.0000	1882.0	2.92%	1610.1	2.60%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-6	-1.485e+01	0.0000	1563.0	2.42%	1322.6	2.13%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-6	-1.432e+01	0.0000	8293.0	12.85%	7572.2	12.21%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-6	-1.428e+01	0.0000	2572.0	3.98%	2245.3	3.62%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-6	-1.421e+01	0.0000	10442.0	16.17%	9597.5	15.48%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-6	-1.419e+01	0.0000	4685.0	7.26%	4199.4	6.77%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-5	-1.371e+01	0.0000	3572.0	5.53%	3172.2	5.12%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-5	-1.367e+01	0.0000	8282.0	12.83%	7572.2	12.22%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-5	-1.309e+01	0.0000	4899.0	7.59%	4413.0	7.12%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-5	-1.294e+01	0.0000	130.0	0.20%	81.6	0.13%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-5	-1.282e+01	0.0000	11992.0	18.58%	11087.8	17.89%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-5	-1.236e+01	0.0000	2670.0	4.14%	2353.9	3.80%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-5	-1.227e+01	0.0000	1110.0	1.72%	931.9	1.50%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-5	-1.185e+01	0.0000	2710.0	4.20%	2395.8	3.86%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-5	-1.156e+01	0.0000	470.0	0.73%	368.1	0.59%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-4	-1.137e+01	0.0000	1422.0	2.20%	1219.7	1.97%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-4	-1.124e+01	0.0000	40.0	0.06%	18.9	0.03%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-4	-1.093e+01	0.0000	715.0	1.11%	586.7	0.95%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-4	-1.019e+01	0.0001	3189.0	4.94%	2857.2	4.61%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-4	-1.010e+01	0.0001	2104.0	3.26%	1854.4	2.99%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-4	-1.006e+01	0.0001	388.0	0.60%	303.1	0.49%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-4	-9.868e+00	0.0001	537.0	0.83%	434.5	0.70%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-4	-9.768e+00	0.0001	4578.0	7.09%	4158.6	6.71%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-4	-9.701e+00	0.0001	15994.0	24.77%	14955.9	24.13%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-4	-9.559e+00	0.0001	373.0	0.58%	292.8	0.47%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-3	-8.839e+00	0.0003	412.0	0.64%	329.1	0.53%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-8.726e+00	0.0003	634.0	0.98%	526.2	0.85%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-3	-8.668e+00	0.0004	1789.0	2.77%	1578.9	2.55%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-3	-8.272e+00	0.0005	121.0	0.19%	83.2	0.13%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-8.166e+00	0.0006	3567.0	5.53%	3236.4	5.22%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-3	-8.051e+00	0.0006	2003.0	3.10%	1782.5	2.88%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-8.040e+00	0.0007	262.0	0.41%	202.3	0.33%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-7.972e+00	0.0007	3611.0	5.59%	3280.2	5.29%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-3	-7.690e+00	0.0009	1750.0	2.71%	1552.3	2.50%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-3	-7.303e+00	0.0013	190.0	0.29%	143.8	0.23%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-3	-7.206e+00	0.0015	824.0	1.28%	707.8	1.14%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-3	-7.089e+00	0.0016	4853.0	7.52%	4460.3	7.20%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-6.749e+00	0.0023	1526.0	2.36%	1355.3	2.19%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-6.569e+00	0.0027	2354.0	3.65%	2126.3	3.43%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-6.520e+00	0.0029	549.0	0.85%	463.7	0.75%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-6.482e+00	0.0030	3169.0	4.91%	2889.8	4.66%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-2	-6.476e+00	0.0030	95.0	0.15%	66.1	0.11%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-6.251e+00	0.0037	945.0	1.46%	825.3	1.33%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-6.122e+00	0.0042	3165.0	4.90%	2891.3	4.66%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-2	-5.918e+00	0.0051	6512.0	10.09%	6050.3	9.76%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-2	-5.748e+00	0.0060	5086.0	7.88%	4706.4	7.59%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-2	-5.635e+00	0.0067	22111.0	34.25%	20920.5	33.75%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.602e+00	0.0069	1251.0	1.94%	1113.7	1.80%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-5.387e+00	0.0086	4938.0	7.65%	4574.1	7.38%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-5.145e+00	0.0108	701.0	1.09%	611.2	0.99%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-5.145e+00	0.0108	701.0	1.09%	611.2	0.99%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-2	-5.067e+00	0.0117	2100.0	3.25%	1910.5	3.08%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-2	-4.974e+00	0.0127	4741.0	7.34%	4397.7	7.09%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-2	-4.874e+00	0.0140	587.0	0.91%	509.4	0.82%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-4.624e+00	0.0179	1970.0	3.05%	1795.3	2.90%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-4.515e+00	0.0199	77.0	0.12%	56.0	0.09%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-1	-4.469e+00	0.0207	5070.0	7.85%	4720.4	7.61%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-1	-4.315e+00	0.0241	2776.0	4.30%	2557.1	4.12%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-4.164e+00	0.0279	490.0	0.76%	426.9	0.69%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-4.090e+00	0.0299	643.0	1.00%	567.1	0.91%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-4.015e+00	0.0321	2261.0	3.50%	2078.6	3.35%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-3.827e+00	0.0386	1240.0	1.92%	1125.0	1.81%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-1	-3.784e+00	0.0402	2298.0	3.56%	2117.5	3.42%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-1	-3.658e+00	0.0454	891.0	1.38%	801.3	1.29%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.501e+00	0.0529	4459.0	6.91%	4166.3	6.72%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-3.389e+00	0.0589	35.0	0.05%	24.7	0.04%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-1	-3.103e+00	0.0781	3720.0	5.76%	3476.8	5.61%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.997e+00	0.0865	440.0	0.68%	390.9	0.63%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.975e+00	0.0881	749.0	1.16%	677.4	1.09%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-2.869e+00	0.0976	30.0	0.05%	22.0	0.04%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.840e+00	0.1001	56.0	0.09%	43.9	0.07%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-2.830e+00	0.1006	25.0	0.04%	17.0	0.03%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-2.768e+00	0.1067	7801.0	12.08%	7369.2	11.89%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.756e+00	0.1076	290.0	0.45%	254.2	0.41%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.721e+00	0.1110	4129.0	6.40%	3875.3	6.25%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.574e+00	0.1280	334.0	0.52%	296.0	0.48%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.480e+00	0.1402	231.0	0.36%	202.0	0.33%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.455e+00	0.1432	2185.0	3.38%	2038.5	3.29%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.362e+00	0.1565	388.0	0.60%	348.9	0.56%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.295e+00	0.1667	3506.0	5.43%	3296.5	5.32%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.976e+00	0.2285	1209.0	1.87%	1125.2	1.82%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.975e+00	0.2285	11752.0	18.20%	11182.7	18.04%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.959e+00	0.2306	6817.0	10.56%	6465.8	10.43%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.829e+00	0.2617	222.0	0.34%	199.6	0.32%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.784e+00	0.2727	14827.0	22.97%	14138.7	22.81%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.698e+00	0.2961	225.0	0.35%	203.8	0.33%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.683e+00	0.2996	1042.0	1.61%	973.7	1.57%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.652e+00	0.3078	1306.0	2.02%	1224.2	1.97%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.625e+00	0.3152	445.0	0.69%	410.6	0.66%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.623e+00	0.3152	1700.0	2.63%	1599.6	2.58%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.561e+00	0.3334	426.0	0.66%	393.3	0.63%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.479e+00	0.3606	15263.0	23.64%	14578.1	23.52%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.377e+00	0.3978	1408.0	2.18%	1328.2	2.14%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.316e+00	0.4216	886.0	1.37%	833.9	1.35%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.219e+00	0.4629	110.0	0.17%	100.1	0.16%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.150e+00	0.4939	473.0	0.73%	444.0	0.72%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.119e+00	0.5077	1556.0	2.41%	1477.6	2.38%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.110e+00	0.5104	611.0	0.95%	576.2	0.93%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-9.743e-01	0.5828	1743.0	2.70%	1661.9	2.68%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-8.239e-01	0.6749	5581.0	8.64%	5348.1	8.63%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-8.094e-01	0.6824	3005.0	4.65%	2878.0	4.64%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-7.700e-01	0.7074	1514.0	2.35%	1450.6	2.34%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.131e-01	0.8247	1677.0	2.60%	1614.6	2.60%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.980e-01	0.8343	1646.0	2.55%	1586.0	2.56%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.925e-01	0.8361	158.0	0.24%	153.5	0.25%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-5.540e-01	0.8659	84.0	0.13%	82.6	0.13%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.177e-01	0.8948	6288.0	9.74%	6055.3	9.77%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.595e-01	0.9453	1594.0	2.47%	1543.4	2.49%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-3.626e-01	1.0000	140.0	0.22%	140.8	0.23%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.556e-01	1.0000	1088.0	1.69%	1061.0	1.71%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-3.359e-01	1.0000	23399.0	36.24%	22534.2	36.35%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.340e-01	1.0000	467.0	0.72%	460.9	0.74%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.163e-01	1.0000	847.0	1.31%	830.9	1.34%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.113e-01	1.0000	66.0	0.10%	68.5	0.11%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-2.963e-01	1.0000	6832.0	10.58%	6610.0	10.66%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.914e-01	1.0000	25.0	0.04%	27.2	0.04%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.907e-01	1.0000	1738.0	2.69%	1695.6	2.74%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-2.272e-01	1.0000	341.0	0.53%	342.4	0.55%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.151e-01	1.0000	1116.0	1.73%	1099.6	1.77%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.039e-01	1.0000	2010.0	3.11%	1968.7	3.18%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.880e-01	1.0000	9632.0	14.92%	9331.0	15.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.809e-01	1.0000	224.0	0.35%	229.6	0.37%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-1.779e-01	1.0000	11579.0	17.94%	11210.8	18.08%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.648e-01	1.0000	559.0	0.87%	560.6	0.90%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.295e-01	1.0000	8186.0	12.68%	7955.3	12.83%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.285e-01	1.0000	172.0	0.27%	180.8	0.29%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-9.890e-02	1.0000	451.0	0.70%	460.5	0.74%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-9.772e-02	1.0000	346.0	0.54%	356.1	0.57%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-9.691e-02	1.0000	8739.0	13.54%	8502.7	13.72%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-9.332e-02	1.0000	6327.0	9.80%	6173.9	9.96%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.844e-02	1.0000	342.0	0.53%	353.3	0.57%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-8.723e-02	1.0000	5823.0	9.02%	5688.2	9.18%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.332e-02	1.0000	2076.0	3.22%	2057.0	3.32%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-7.025e-02	1.0000	13524.0	20.95%	13134.7	21.19%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.654e-02	1.0000	1383.0	2.14%	1382.3	2.23%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.489e-02	1.0000	5769.0	8.94%	5652.0	9.12%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.154e-02	1.0000	2100.0	3.25%	2088.6	3.37%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-4.702e-02	1.0000	15192.0	23.53%	14762.9	23.81%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.684e-02	1.0000	9293.0	14.39%	9068.2	14.63%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-4.523e-02	1.0000	3062.0	4.74%	3029.2	4.89%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-3.300e-02	1.0000	7095.0	10.99%	6954.1	11.22%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.954e-02	1.0000	1422.0	2.20%	1434.1	2.31%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.869e-02	1.0000	29639.0	45.91%	28691.6	46.28%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.627e-02	1.0000	231.0	0.36%	251.5	0.41%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.485e-02	1.0000	1647.0	2.55%	1658.7	2.68%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-2.390e-02	1.0000	2843.0	4.40%	2830.7	4.57%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.831e-02	1.0000	3388.0	5.25%	3368.2	5.43%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.741e-02	1.0000	243.0	0.38%	266.5	0.43%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.594e-02	1.0000	63.0	0.10%	78.4	0.13%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.587e-02	1.0000	1599.0	2.48%	1618.2	2.61%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.462e-02	1.0000	4559.0	7.06%	4515.7	7.28%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.354e-02	1.0000	562.0	0.87%	591.8	0.95%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.349e-02	1.0000	10507.0	16.28%	10289.6	16.60%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.688e-03	1.0000	398.0	0.62%	430.1	0.69%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.692e-03	1.0000	108.0	0.17%	130.6	0.21%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-5.582e-03	1.0000	493.0	0.76%	529.1	0.85%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-5.226e-03	1.0000	1037.0	1.61%	1076.1	1.74%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-4.276e-03	1.0000	5845.0	9.05%	5798.0	9.35%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.904e-03	1.0000	7570.0	11.73%	7479.3	12.07%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.817e-03	1.0000	1211.0	1.88%	1253.7	2.02%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.021e-03	1.0000	1653.0	2.56%	1695.5	2.74%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.179e-03	1.0000	219.0	0.34%	253.7	0.41%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.650e-04	1.0000	3269.0	5.06%	3309.6	5.34%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-8.200e-04	1.0000	806.0	1.25%	862.2	1.39%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-6.250e-04	1.0000	4012.0	6.21%	4045.4	6.53%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.490e-04	1.0000	2847.0	4.41%	2900.8	4.68%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-3.520e-04	1.0000	1583.0	2.45%	1651.7	2.66%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-2.180e-04	1.0000	11773.0	18.24%	11638.4	18.77%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.830e-04	1.0000	529.0	0.82%	590.8	0.95%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.630e-04	1.0000	6598.0	10.22%	6604.4	10.65%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.490e-04	1.0000	6358.0	9.85%	6371.5	10.28%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-1.290e-04	1.0000	4143.0	6.42%	4200.4	6.78%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-8.500e-05	1.0000	1182.0	1.83%	1262.6	2.04%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-7.900e-05	1.0000	2542.0	3.94%	2624.2	4.23%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.100e-05	1.0000	11163.0	17.29%	11085.3	17.88%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.200e-05	1.0000	10114.0	15.67%	10077.6	16.26%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.400e-05	1.0000	180.0	0.28%	232.8	0.38%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.000e-06	1.0000	534.0	0.83%	615.7	0.99%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-5.000e-06	1.0000	9940.0	15.40%	9939.1	16.03%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-4.000e-06	1.0000	491.0	0.76%	572.4	0.92%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.000e-06	1.0000	785.0	1.22%	880.4	1.42%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-3.000e-06	1.0000	6127.0	9.49%	6214.3	10.02%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-2.000e-06	1.0000	1523.0	2.36%	1638.9	2.64%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.000e-06	1.0000	992.0	1.54%	1097.4	1.77%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.000e-06	1.0000	235.0	0.36%	301.2	0.49%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.000e-06	1.0000	327.0	0.51%	402.8	0.65%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.000e-06	1.0000	314.0	0.49%	391.0	0.63%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.000e-06	1.0000	3421.0	5.30%	3555.2	5.74%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-0.000e+00	1.0000	7310.0	11.32%	7404.3	11.94%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-0.000e+00	1.0000	1730.0	2.68%	1876.8	3.03%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-0.000e+00	1.0000	6549.0	10.14%	6696.1	10.80%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-0.000e+00	1.0000	699.0	1.08%	820.0	1.32%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-0.000e+00	1.0000	1472.0	2.28%	1626.0	2.62%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-0.000e+00	1.0000	366.0	0.57%	463.1	0.75%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-0.000e+00	1.0000	1923.0	2.98%	2087.7	3.37%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	734.0	1.14%	863.4	1.39%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	7918.0	12.26%	8074.1	13.02%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	3876.0	6.00%	4067.1	6.56%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	3273.0	5.07%	3463.2	5.59%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-0.000e+00	1.0000	1559.0	2.41%	1725.7	2.78%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	5746.0	8.90%	5931.1	9.57%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-0.000e+00	1.0000	3467.0	5.37%	3670.4	5.92%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	197.0	0.31%	283.2	0.46%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-0.000e+00	1.0000	9890.0	15.32%	10044.6	16.20%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-0.000e+00	1.0000	6264.0	9.70%	6474.5	10.44%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-0.000e+00	1.0000	760.0	1.18%	906.6	1.46%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-0.000e+00	1.0000	2093.0	3.24%	2299.5	3.71%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-0.000e+00	1.0000	6167.0	9.55%	6395.7	10.32%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	7540.0	11.68%	7757.4	12.51%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-0.000e+00	1.0000	2497.0	3.87%	2721.5	4.39%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	5730.0	8.88%	5981.8	9.65%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-0.000e+00	1.0000	1121.0	1.74%	1305.8	2.11%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	10365.0	16.06%	10567.1	17.05%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-0.000e+00	1.0000	1328.0	2.06%	1527.7	2.46%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	1735.0	2.69%	1952.4	3.15%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-0.000e+00	1.0000	2505.0	3.88%	2749.8	4.44%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-0.000e+00	1.0000	2583.0	4.00%	2860.3	4.61%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	18302.0	28.35%	18488.7	29.82%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	14917.0	23.11%	16932.7	27.31%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	0.000e+00	1.0000	4292.0	6.65%	5089.6	8.21%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	17949.0	27.80%	19420.8	31.33%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	5043.0	7.81%	5663.6	9.14%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	7484.0	11.59%	8210.5	13.24%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	0.000e+00	1.0000	15186.0	23.52%	15892.1	25.64%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	4011.0	6.21%	4917.0	7.93%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	5492.0	8.51%	7743.5	12.49%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	9389.0	14.54%	11982.2	19.33%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	0.000e+00	1.0000	2812.0	4.36%	3275.8	5.28%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	3429.0	5.31%	5123.4	8.26%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	290.0	0.45%	786.2	1.27%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	3198.0	4.95%	4423.4	7.14%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	7004.0	10.85%	8228.8	13.27%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	3936.0	6.10%	5289.7	8.53%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	18290.0	28.33%	19116.8	30.84%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	11632.0	18.02%	13057.0	21.06%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	14587.0	22.59%	14950.4	24.12%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	0.000e+00	1.0000	3182.0	4.93%	3699.4	5.97%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	1149.0	1.78%	1986.6	3.20%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	30791.0	47.69%	31945.1	51.53%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	0.000e+00	1.0000	3793.0	5.88%	4193.0	6.76%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	0.000e+00	1.0000	5816.0	9.01%	6335.1	10.22%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	0.000e+00	1.0000	4886.0	7.57%	5436.5	8.77%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	0.000e+00	1.0000	4099.0	6.35%	4512.2	7.28%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	4422.0	6.85%	5420.8	8.74%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	2601.0	4.03%	3122.7	5.04%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	929.0	1.44%	1256.2	2.03%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	597.0	0.92%	946.7	1.53%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	0.000e+00	1.0000	6945.0	10.76%	7738.5	12.48%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	6179.0	9.57%	7330.8	11.83%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	19481.0	30.18%	20626.6	33.27%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	0.000e+00	1.0000	6384.0	9.89%	6874.9	11.09%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	1960.0	3.04%	2385.1	3.85%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	0.000e+00	1.0000	11571.0	17.92%	11950.8	19.28%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	4869.0	7.54%	5533.4	8.93%