Information for 1-ACAAATATTG (Motif 2)

C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G
Reverse Opposite:
G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C T A G G C A T
p-value:1e-100
log p-value:-2.315e+02
Information Content per bp:1.902
Number of Target Sequences with motif258.0
Percentage of Target Sequences with motif6.21%
Number of Background Sequences with motif508.7
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets103.6 +/- 50.7bp
Average Position of motif in Background101.1 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.83
Offset:1
Orientation:forward strand
Alignment:ACAAATATTG-----
-CTAATATTGCTAAA
 C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.83
Offset:1
Orientation:forward strand
Alignment:ACAAATATTG-----
-CTAATATTGCTAAA
 C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:ACAAATATTG
--AATTATT-
 C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G
A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ACAAATATTG
AAACAAACATTC
 A C G T A C G T C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

LHX2/MA0700.2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ACAAATATTG
AACCAATTAAT-
 A C G T A C G T C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----ACAAATATTG
NNNTAACAATTATAN
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

PB0197.1_Zfp105_2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACAAATATTG------
NAAANTTATTGAANCAN
 A C G T C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

MF0008.1_MADS_class/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ACAAATATTG
CCATATATGG
 C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

DLX5/MA1476.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ACAAATATTG
GCAATTAC--
 C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G
T A C G G A T C T G C A C G T A A C G T A C G T C G T A A G T C A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ACAAATATTG
TATGTAAATAT--
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T