Information for 3-TTTATTAG (Motif 9)

A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G
Reverse Opposite:
A T G C G A C T G C T A C T G A A C G T C G T A C T G A T C G A
p-value:1e-66
log p-value:-1.541e+02
Information Content per bp:1.648
Number of Target Sequences with motif769.0
Percentage of Target Sequences with motif18.52%
Number of Background Sequences with motif4225.1
Percentage of Background Sequences with motif9.67%
Average Position of motif in Targets101.6 +/- 55.0bp
Average Position of motif in Background100.7 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-TTTATTAG-
TTTTATKRGG
 A C G T A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G A C G T
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTAG-
TTTTATTRGN
 A C G T A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G A C G T
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTAG
NTTTTATDRG
 A C G T A C G T A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATTAG---
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T A C G T A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---TTTATTAG-
DGWTTTATGRCN
 A C G T A C G T A C G T A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXA13/MA0650.2/Jaspar

Match Rank:6
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTAG-
GTTTTATTGGN
 A C G T A C G T A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G A C G T
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----TTTATTAG----
NAATTTTACGAGNTNN
 A C G T A C G T A C G T A C G T A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.81
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATTAG---
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T A C G T A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXC13/MA0907.1/Jaspar

Match Rank:9
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTAG-
NTTTTACGAGN
 A C G T A C G T A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----TTTATTAG----
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A G C T G A C T C G A T T G C A G A C T C G A T C T G A A T C G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T