Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4155)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43513)	% of Background Sequences with Motif
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-228	-5.255e+02	0.0000	403.0	9.70%	500.4	1.15%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-64	-1.482e+02	0.0000	1391.0	33.49%	9604.7	21.99%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-61	-1.415e+02	0.0000	1006.0	24.22%	6310.1	14.45%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-32	-7.435e+01	0.0000	256.0	6.16%	1170.7	2.68%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-31	-7.364e+01	0.0000	253.0	6.09%	1155.5	2.65%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-31	-7.333e+01	0.0000	97.0	2.34%	229.5	0.53%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-28	-6.561e+01	0.0000	197.0	4.74%	840.0	1.92%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-28	-6.485e+01	0.0000	1251.0	30.12%	9897.0	22.66%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-28	-6.470e+01	0.0000	578.0	13.92%	3794.4	8.69%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-25	-5.930e+01	0.0000	875.0	21.07%	6514.6	14.92%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-25	-5.894e+01	0.0000	244.0	5.88%	1216.8	2.79%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-24	-5.729e+01	0.0000	1776.0	42.76%	15265.4	34.95%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-24	-5.659e+01	0.0000	775.0	18.66%	5665.0	12.97%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-22	-5.145e+01	0.0000	93.0	2.24%	288.1	0.66%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-21	-4.951e+01	0.0000	283.0	6.81%	1605.8	3.68%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-21	-4.918e+01	0.0000	659.0	15.87%	4779.2	10.94%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-20	-4.682e+01	0.0000	681.0	16.40%	5026.3	11.51%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-18	-4.244e+01	0.0000	1636.0	39.39%	14336.9	32.82%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-17	-4.079e+01	0.0000	82.0	1.97%	276.0	0.63%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-15	-3.579e+01	0.0000	1571.0	37.83%	13923.6	31.88%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-14	-3.269e+01	0.0000	761.0	18.32%	6115.9	14.00%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-11	-2.573e+01	0.0000	346.0	8.33%	2502.0	5.73%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-10	-2.464e+01	0.0000	617.0	14.86%	5003.8	11.46%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-10	-2.382e+01	0.0000	745.0	17.94%	6243.8	14.30%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-10	-2.375e+01	0.0000	330.0	7.95%	2404.4	5.50%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-9	-2.178e+01	0.0000	353.0	8.50%	2654.5	6.08%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-9	-2.103e+01	0.0000	84.0	2.02%	421.9	0.97%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-8	-2.068e+01	0.0000	559.0	13.46%	4583.4	10.49%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-8	-2.041e+01	0.0000	747.0	17.99%	6386.4	14.62%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-8	-2.004e+01	0.0000	650.0	15.65%	5468.4	12.52%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-8	-1.943e+01	0.0000	542.0	13.05%	4464.7	10.22%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-8	-1.883e+01	0.0000	1609.0	38.74%	15070.1	34.50%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-8	-1.848e+01	0.0000	425.0	10.23%	3400.4	7.79%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-7	-1.808e+01	0.0000	48.0	1.16%	199.8	0.46%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-7	-1.802e+01	0.0000	70.0	1.69%	349.7	0.80%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-7	-1.802e+01	0.0000	70.0	1.69%	349.7	0.80%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-7	-1.800e+01	0.0000	350.0	8.43%	2724.2	6.24%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-7	-1.780e+01	0.0000	42.0	1.01%	163.1	0.37%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-7	-1.760e+01	0.0000	448.0	10.79%	3641.7	8.34%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-7	-1.759e+01	0.0000	560.0	13.48%	4698.9	10.76%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-7	-1.740e+01	0.0000	328.0	7.90%	2540.0	5.82%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-7	-1.726e+01	0.0000	400.0	9.63%	3205.6	7.34%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-7	-1.656e+01	0.0000	375.0	9.03%	2995.1	6.86%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-7	-1.655e+01	0.0000	45.0	1.08%	190.0	0.44%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-6	-1.611e+01	0.0000	518.0	12.47%	4352.2	9.96%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-6	-1.581e+01	0.0000	225.0	5.42%	1656.1	3.79%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-6	-1.562e+01	0.0000	569.0	13.70%	4858.2	11.12%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-6	-1.477e+01	0.0000	35.0	0.84%	138.6	0.32%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-6	-1.455e+01	0.0000	188.0	4.53%	1359.5	3.11%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-6	-1.416e+01	0.0000	154.0	3.71%	1073.4	2.46%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-6	-1.413e+01	0.0000	872.0	21.00%	7886.9	18.06%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-6	-1.402e+01	0.0000	322.0	7.75%	2582.3	5.91%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-5	-1.340e+01	0.0000	50.0	1.20%	249.9	0.57%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-5	-1.232e+01	0.0000	240.0	5.78%	1879.1	4.30%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-5	-1.209e+01	0.0000	400.0	9.63%	3380.1	7.74%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-5	-1.207e+01	0.0000	422.0	10.16%	3590.2	8.22%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-5	-1.202e+01	0.0000	133.0	3.20%	935.5	2.14%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-5	-1.187e+01	0.0001	519.0	12.50%	4531.7	10.38%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-4	-1.116e+01	0.0001	986.0	23.74%	9192.4	21.05%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-4	-1.013e+01	0.0003	372.0	8.96%	3190.8	7.31%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-4	-9.753e+00	0.0004	677.0	16.30%	6187.8	14.17%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-4	-9.625e+00	0.0005	46.0	1.11%	258.9	0.59%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-4	-9.529e+00	0.0005	193.0	4.65%	1530.9	3.51%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-4	-9.494e+00	0.0005	1138.0	27.40%	10842.4	24.82%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-9.208e+00	0.0007	28.0	0.67%	131.5	0.30%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-3	-9.193e+00	0.0007	593.0	14.28%	5387.2	12.33%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-3	-8.642e+00	0.0012	311.0	7.49%	2668.6	6.11%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-8.624e+00	0.0012	30.0	0.72%	150.7	0.34%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-3	-8.526e+00	0.0013	914.0	22.01%	8639.6	19.78%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-7.898e+00	0.0023	331.0	7.97%	2892.5	6.62%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-7.557e+00	0.0032	268.0	6.45%	2302.9	5.27%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-3	-7.532e+00	0.0033	688.0	16.57%	6434.0	14.73%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-3	-7.393e+00	0.0037	277.0	6.67%	2395.7	5.48%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-3	-7.379e+00	0.0037	443.0	10.67%	4009.5	9.18%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-7.317e+00	0.0039	93.0	2.24%	687.5	1.57%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-3	-7.189e+00	0.0044	100.0	2.41%	752.0	1.72%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-3	-7.137e+00	0.0045	45.0	1.08%	282.0	0.65%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-3	-7.040e+00	0.0049	49.0	1.18%	316.6	0.72%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-3	-7.020e+00	0.0050	843.0	20.30%	8031.8	18.39%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-6.821e+00	0.0060	84.0	2.02%	619.6	1.42%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-2	-6.732e+00	0.0065	197.0	4.74%	1660.5	3.80%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-6.679e+00	0.0067	1733.0	41.73%	17217.8	39.42%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-6.661e+00	0.0068	82.0	1.97%	605.3	1.39%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-2	-6.249e+00	0.0101	213.0	5.13%	1831.8	4.19%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-6.182e+00	0.0107	486.0	11.70%	4505.9	10.32%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-2	-6.151e+00	0.0109	356.0	8.57%	3222.1	7.38%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-2	-6.074e+00	0.0116	314.0	7.56%	2815.8	6.45%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-6.002e+00	0.0124	645.0	15.53%	6109.9	13.99%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-5.992e+00	0.0124	102.0	2.46%	801.3	1.83%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.887e+00	0.0136	179.0	4.31%	1522.1	3.48%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-2	-5.838e+00	0.0141	272.0	6.55%	2418.7	5.54%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-2	-5.783e+00	0.0147	381.0	9.17%	3489.1	7.99%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-5.693e+00	0.0159	43.0	1.04%	288.4	0.66%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-2	-5.681e+00	0.0160	577.0	13.89%	5449.0	12.48%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-5.635e+00	0.0165	421.0	10.14%	3894.7	8.92%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-5.273e+00	0.0235	251.0	6.04%	2242.7	5.13%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-5.174e+00	0.0257	58.0	1.40%	427.9	0.98%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-2	-5.169e+00	0.0257	137.0	3.30%	1152.3	2.64%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-5.105e+00	0.0270	9.0	0.22%	34.2	0.08%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-5.094e+00	0.0270	90.0	2.17%	717.0	1.64%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-2	-5.087e+00	0.0270	29.0	0.70%	182.4	0.42%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-2	-5.064e+00	0.0273	6.0	0.14%	17.9	0.04%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-5.061e+00	0.0273	130.0	3.13%	1090.6	2.50%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-4.943e+00	0.0302	101.0	2.43%	823.0	1.88%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-4.931e+00	0.0303	268.0	6.45%	2426.8	5.56%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-4.836e+00	0.0329	148.0	3.56%	1270.0	2.91%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-2	-4.689e+00	0.0378	916.0	22.06%	8978.2	20.56%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-4.591e+00	0.0413	372.0	8.96%	3475.6	7.96%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-4.476e+00	0.0459	4.0	0.10%	9.2	0.02%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.468e+00	0.0459	300.0	7.22%	2768.2	6.34%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-4.460e+00	0.0459	329.0	7.92%	3056.2	7.00%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-1	-4.419e+00	0.0473	340.0	8.19%	3168.7	7.25%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-4.404e+00	0.0476	585.0	14.09%	5631.8	12.89%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-4.288e+00	0.0530	394.0	9.49%	3716.2	8.51%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-4.282e+00	0.0530	57.0	1.37%	439.6	1.01%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-4.195e+00	0.0572	201.0	4.84%	1810.2	4.14%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-4.189e+00	0.0572	169.0	4.07%	1499.1	3.43%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-4.060e+00	0.0643	320.0	7.71%	2993.9	6.85%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-4.053e+00	0.0643	113.0	2.72%	967.1	2.21%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-4.042e+00	0.0644	386.0	9.29%	3654.4	8.37%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1	-4.032e+00	0.0645	238.0	5.73%	2183.0	5.00%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.998e+00	0.0662	24.0	0.58%	157.0	0.36%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.939e+00	0.0696	215.0	5.18%	1961.3	4.49%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.853e+00	0.0753	550.0	13.24%	5325.2	12.19%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.853e+00	0.0753	658.0	15.84%	6424.3	14.71%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-1	-3.789e+00	0.0790	282.0	6.79%	2633.9	6.03%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-1	-3.784e+00	0.0790	127.0	3.06%	1112.1	2.55%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-3.654e+00	0.0890	285.0	6.86%	2672.8	6.12%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.628e+00	0.0906	189.0	4.55%	1724.0	3.95%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-1	-3.615e+00	0.0911	274.0	6.60%	2565.4	5.87%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1	-3.613e+00	0.0911	194.0	4.67%	1773.9	4.06%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-3.582e+00	0.0927	283.0	6.81%	2657.8	6.09%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-3.581e+00	0.0927	13.0	0.31%	74.2	0.17%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.572e+00	0.0927	71.0	1.71%	589.0	1.35%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.549e+00	0.0937	547.0	13.17%	5323.6	12.19%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-3.547e+00	0.0937	424.0	10.21%	4077.0	9.33%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.518e+00	0.0953	232.0	5.59%	2154.3	4.93%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.450e+00	0.1013	224.0	5.39%	2079.4	4.76%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-3.428e+00	0.1027	121.0	2.91%	1071.0	2.45%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.385e+00	0.1064	24.0	0.58%	168.0	0.38%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-3.304e+00	0.1147	340.0	8.19%	3249.9	7.44%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-1	-3.188e+00	0.1279	152.0	3.66%	1384.1	3.17%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.124e+00	0.1354	382.0	9.20%	3688.6	8.44%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.042e+00	0.1459	42.0	1.01%	335.7	0.77%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-1	-3.005e+00	0.1504	276.0	6.65%	2629.8	6.02%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.959e+00	0.1563	123.0	2.96%	1112.3	2.55%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-2.909e+00	0.1632	235.0	5.66%	2225.9	5.10%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-2.900e+00	0.1636	161.0	3.88%	1489.7	3.41%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.896e+00	0.1636	163.0	3.92%	1509.5	3.46%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.878e+00	0.1651	315.0	7.58%	3032.9	6.94%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.858e+00	0.1672	84.0	2.02%	738.3	1.69%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.818e+00	0.1729	266.0	6.41%	2543.6	5.82%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-1	-2.808e+00	0.1735	167.0	4.02%	1554.8	3.56%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-2.735e+00	0.1854	88.0	2.12%	782.1	1.79%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-1	-2.713e+00	0.1883	322.0	7.75%	3117.2	7.14%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-2.687e+00	0.1921	1125.0	27.09%	11382.9	26.06%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.659e+00	0.1963	178.0	4.29%	1673.1	3.83%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-2.600e+00	0.2069	7.0	0.17%	38.8	0.09%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.571e+00	0.2115	150.0	3.61%	1400.9	3.21%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.571e+00	0.2115	90.0	2.17%	809.2	1.85%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.478e+00	0.2294	8.0	0.19%	47.8	0.11%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.453e+00	0.2338	223.0	5.37%	2139.9	4.90%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.403e+00	0.2442	31.0	0.75%	251.4	0.58%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.382e+00	0.2478	47.0	1.13%	403.0	0.92%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.377e+00	0.2478	309.0	7.44%	3016.8	6.91%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.298e+00	0.2662	18.0	0.43%	135.5	0.31%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.298e+00	0.2662	237.0	5.71%	2293.9	5.25%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.285e+00	0.2665	85.0	2.05%	774.3	1.77%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.274e+00	0.2680	125.0	3.01%	1170.4	2.68%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.264e+00	0.2690	150.0	3.61%	1420.6	3.25%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.249e+00	0.2714	145.0	3.49%	1372.0	3.14%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.208e+00	0.2811	109.0	2.62%	1015.6	2.33%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.150e+00	0.2962	308.0	7.42%	3028.9	6.93%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.121e+00	0.3031	832.0	20.03%	8430.3	19.30%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.090e+00	0.3111	63.0	1.52%	568.4	1.30%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.054e+00	0.3205	843.0	20.30%	8555.4	19.59%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-2.038e+00	0.3238	382.0	9.20%	3797.1	8.69%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.036e+00	0.3238	295.0	7.10%	2907.7	6.66%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.025e+00	0.3244	129.0	3.11%	1226.2	2.81%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.948e+00	0.3486	39.0	0.94%	341.9	0.78%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.911e+00	0.3596	12.0	0.29%	89.0	0.20%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.902e+00	0.3607	758.0	18.25%	7698.7	17.63%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.852e+00	0.3773	1184.0	28.51%	12141.0	27.80%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.844e+00	0.3782	405.0	9.75%	4057.7	9.29%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.838e+00	0.3783	545.0	13.12%	5502.4	12.60%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.829e+00	0.3798	44.0	1.06%	394.2	0.90%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.785e+00	0.3949	128.0	3.08%	1233.8	2.82%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.770e+00	0.3986	127.0	3.06%	1224.3	2.80%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.749e+00	0.4049	1500.0	36.12%	15466.1	35.41%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.655e+00	0.4424	370.0	8.91%	3721.5	8.52%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.619e+00	0.4565	34.0	0.82%	305.3	0.70%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.597e+00	0.4643	717.0	17.26%	7326.0	16.77%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.565e+00	0.4767	15.0	0.36%	124.8	0.29%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.538e+00	0.4873	551.0	13.27%	5611.4	12.85%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.500e+00	0.5036	28.0	0.67%	251.3	0.58%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.489e+00	0.5066	508.0	12.23%	5173.2	11.84%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.476e+00	0.5105	521.0	12.55%	5310.6	12.16%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.475e+00	0.5105	72.0	1.73%	690.3	1.58%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.441e+00	0.5231	150.0	3.61%	1485.8	3.40%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.438e+00	0.5231	250.0	6.02%	2512.0	5.75%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.420e+00	0.5289	8.0	0.19%	62.8	0.14%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.350e+00	0.5645	43.0	1.04%	407.0	0.93%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.327e+00	0.5751	87.0	2.09%	852.1	1.95%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.326e+00	0.5751	496.0	11.94%	5076.2	11.62%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.308e+00	0.5806	15.0	0.36%	131.5	0.30%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.267e+00	0.6017	450.0	10.84%	4608.2	10.55%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-1.255e+00	0.6061	373.0	8.98%	3810.2	8.72%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.247e+00	0.6080	19.0	0.46%	172.2	0.39%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.215e+00	0.6249	97.0	2.34%	963.2	2.21%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.178e+00	0.6448	108.0	2.60%	1079.6	2.47%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.174e+00	0.6448	11.0	0.26%	96.6	0.22%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.140e+00	0.6636	4.0	0.10%	30.9	0.07%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.139e+00	0.6636	39.0	0.94%	377.2	0.86%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.138e+00	0.6636	28.0	0.67%	266.4	0.61%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.108e+00	0.6757	52.0	1.25%	511.7	1.17%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.105e+00	0.6757	7.0	0.17%	59.3	0.14%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.059e+00	0.7033	74.0	1.78%	740.3	1.69%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.052e+00	0.7048	117.0	2.82%	1184.4	2.71%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.031e+00	0.7163	33.0	0.79%	322.0	0.74%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.002e+00	0.7346	154.0	3.71%	1573.1	3.60%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.976e-01	0.7346	83.0	2.00%	838.6	1.92%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-9.959e-01	0.7346	178.0	4.29%	1823.2	4.17%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-9.948e-01	0.7346	523.0	12.59%	5422.8	12.42%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-9.910e-01	0.7346	124.0	2.99%	1263.8	2.89%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-9.836e-01	0.7346	18.0	0.43%	172.7	0.40%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.590e-01	0.7462	44.0	1.06%	439.1	1.01%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-9.555e-01	0.7462	50.0	1.20%	501.2	1.15%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.488e-01	0.7472	90.0	2.17%	915.3	2.10%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-9.191e-01	0.7664	74.0	1.78%	752.0	1.72%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-9.060e-01	0.7698	42.0	1.01%	422.7	0.97%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-9.060e-01	0.7698	42.0	1.01%	422.7	0.97%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-9.052e-01	0.7698	117.0	2.82%	1200.9	2.75%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.791e-01	0.7840	322.0	7.75%	3344.2	7.66%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-8.781e-01	0.7840	72.0	1.73%	735.2	1.68%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-8.741e-01	0.7840	2.0	0.05%	15.4	0.04%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-8.640e-01	0.7858	193.0	4.65%	1998.5	4.58%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.467e-01	0.7961	332.0	7.99%	3456.0	7.91%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-8.340e-01	0.8029	16.0	0.39%	158.3	0.36%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-8.053e-01	0.8229	327.0	7.87%	3411.1	7.81%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-8.000e-01	0.8238	2.0	0.05%	16.5	0.04%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-7.999e-01	0.8238	212.0	5.10%	2207.6	5.05%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.882e-01	0.8267	75.0	1.81%	775.6	1.78%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.538e-01	0.8521	99.0	2.38%	1030.9	2.36%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-7.377e-01	0.8623	647.0	15.58%	6787.2	15.54%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-7.331e-01	0.8628	2.0	0.05%	17.4	0.04%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-7.293e-01	0.8628	530.0	12.76%	5560.6	12.73%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-7.252e-01	0.8628	200.0	4.82%	2095.0	4.80%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-7.180e-01	0.8653	422.0	10.16%	4428.0	10.14%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-6.922e-01	0.8844	603.0	14.52%	6338.8	14.51%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.856e-01	0.8866	29.0	0.70%	302.0	0.69%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.841e-01	0.8866	25.0	0.60%	260.1	0.60%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-6.835e-01	0.8866	328.0	7.90%	3448.1	7.89%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-6.739e-01	0.8866	95.0	2.29%	999.0	2.29%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-6.617e-01	0.8938	324.0	7.80%	3411.3	7.81%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-6.363e-01	0.9132	203.0	4.89%	2142.5	4.91%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.117e-01	0.9323	333.0	8.02%	3518.1	8.05%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.063e-01	0.9337	69.0	1.66%	732.1	1.68%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.845e-01	0.9506	424.0	10.21%	4485.5	10.27%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-5.694e-01	0.9613	101.0	2.43%	1076.9	2.47%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-5.679e-01	0.9613	38.0	0.92%	407.4	0.93%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.440e-01	0.9784	124.0	2.99%	1324.7	3.03%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.422e-01	0.9784	135.0	3.25%	1441.4	3.30%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-5.242e-01	0.9905	52.0	1.25%	561.3	1.29%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-5.233e-01	0.9905	287.0	6.91%	3055.3	7.00%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.140e-01	0.9931	103.0	2.48%	1106.4	2.53%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.133e-01	0.9931	18.0	0.43%	197.6	0.45%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.108e-01	0.9931	121.0	2.91%	1298.9	2.97%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-5.081e-01	0.9931	188.0	4.53%	2010.2	4.60%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-4.953e-01	0.9968	112.0	2.70%	1205.1	2.76%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-4.858e-01	1.0000	678.0	16.33%	7200.7	16.49%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.640e-01	1.0000	239.0	5.75%	2562.3	5.87%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-4.449e-01	1.0000	60.0	1.44%	657.8	1.51%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.386e-01	1.0000	5.0	0.12%	59.0	0.14%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.337e-01	1.0000	20.0	0.48%	225.4	0.52%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.271e-01	1.0000	231.0	5.56%	2487.8	5.70%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-4.087e-01	1.0000	257.0	6.19%	2769.8	6.34%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-3.938e-01	1.0000	601.0	14.47%	6425.7	14.71%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.868e-01	1.0000	512.0	12.33%	5485.1	12.56%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.810e-01	1.0000	26.0	0.63%	296.7	0.68%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.791e-01	1.0000	71.0	1.71%	786.1	1.80%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.737e-01	1.0000	52.0	1.25%	581.1	1.33%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.629e-01	1.0000	26.0	0.63%	298.2	0.68%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.608e-01	1.0000	52.0	1.25%	583.5	1.34%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-3.278e-01	1.0000	585.0	14.09%	6287.9	14.40%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.054e-01	1.0000	128.0	3.08%	1418.6	3.25%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.822e-01	1.0000	393.0	9.46%	4267.3	9.77%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.784e-01	1.0000	180.0	4.33%	1987.4	4.55%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.781e-01	1.0000	393.0	9.46%	4269.2	9.77%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.625e-01	1.0000	293.0	7.06%	3207.5	7.34%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.599e-01	1.0000	116.0	2.79%	1301.2	2.98%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.569e-01	1.0000	98.0	2.36%	1106.9	2.53%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-2.556e-01	1.0000	42.0	1.01%	491.2	1.12%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.552e-01	1.0000	3.0	0.07%	43.6	0.10%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.404e-01	1.0000	388.0	9.34%	4235.3	9.70%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.402e-01	1.0000	18.0	0.43%	223.6	0.51%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.320e-01	1.0000	649.0	15.63%	7024.6	16.08%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.238e-01	1.0000	46.0	1.11%	542.5	1.24%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.150e-01	1.0000	223.0	5.37%	2476.7	5.67%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.108e-01	1.0000	88.0	2.12%	1010.6	2.31%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.103e-01	1.0000	52.0	1.25%	612.6	1.40%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.094e-01	1.0000	25.0	0.60%	308.6	0.71%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.091e-01	1.0000	40.0	0.96%	478.0	1.09%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.007e-01	1.0000	1370.0	32.99%	14694.1	33.64%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.973e-01	1.0000	79.0	1.90%	916.0	2.10%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.928e-01	1.0000	25.0	0.60%	311.4	0.71%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.911e-01	1.0000	31.0	0.75%	380.8	0.87%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.900e-01	1.0000	123.0	2.96%	1401.4	3.21%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.871e-01	1.0000	476.0	11.46%	5210.4	11.93%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.841e-01	1.0000	22.0	0.53%	278.1	0.64%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.818e-01	1.0000	128.0	3.08%	1459.7	3.34%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.814e-01	1.0000	480.0	11.56%	5257.5	12.04%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.742e-01	1.0000	421.0	10.14%	4630.2	10.60%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.655e-01	1.0000	74.0	1.78%	870.7	1.99%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.629e-01	1.0000	319.0	7.68%	3541.6	8.11%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.602e-01	1.0000	668.0	16.08%	7284.7	16.68%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.585e-01	1.0000	18.0	0.43%	236.9	0.54%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.556e-01	1.0000	2.0	0.05%	36.6	0.08%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.521e-01	1.0000	83.0	2.00%	975.0	2.23%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.458e-01	1.0000	1.0	0.02%	21.3	0.05%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.414e-01	1.0000	1023.0	24.63%	11083.3	25.38%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.356e-01	1.0000	116.0	2.79%	1348.4	3.09%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.269e-01	1.0000	110.0	2.65%	1286.6	2.95%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.251e-01	1.0000	215.0	5.18%	2440.7	5.59%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.247e-01	1.0000	462.0	11.12%	5112.2	11.70%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.236e-01	1.0000	355.0	8.55%	3960.4	9.07%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.218e-01	1.0000	78.0	1.88%	932.6	2.14%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.170e-01	1.0000	922.0	22.20%	10040.6	22.99%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.050e-01	1.0000	67.0	1.61%	816.9	1.87%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.046e-01	1.0000	39.0	0.94%	496.0	1.14%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.031e-01	1.0000	161.0	3.88%	1864.8	4.27%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-9.179e-02	1.0000	18.0	0.43%	252.9	0.58%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-8.784e-02	1.0000	255.0	6.14%	2908.9	6.66%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.524e-02	1.0000	66.0	1.59%	815.8	1.87%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-8.056e-02	1.0000	112.0	2.70%	1337.1	3.06%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.032e-02	1.0000	129.0	3.11%	1527.6	3.50%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-7.943e-02	1.0000	3.0	0.07%	60.2	0.14%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-7.706e-02	1.0000	871.0	20.97%	9559.5	21.89%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-7.449e-02	1.0000	408.0	9.82%	4588.4	10.51%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.635e-02	1.0000	18.0	0.43%	262.0	0.60%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-6.572e-02	1.0000	440.0	10.59%	4948.3	11.33%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-6.417e-02	1.0000	102.0	2.46%	1238.7	2.84%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.328e-02	1.0000	198.0	4.77%	2309.3	5.29%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.017e-02	1.0000	186.0	4.48%	2180.9	4.99%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.003e-02	1.0000	85.0	2.05%	1049.1	2.40%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-5.655e-02	1.0000	452.0	10.88%	5095.0	11.66%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-5.441e-02	1.0000	131.0	3.15%	1574.1	3.60%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.434e-02	1.0000	26.0	0.63%	365.9	0.84%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.709e-02	1.0000	190.0	4.58%	2242.8	5.13%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.535e-02	1.0000	164.0	3.95%	1955.4	4.48%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.530e-02	1.0000	15.0	0.36%	233.7	0.53%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.141e-02	1.0000	29.0	0.70%	410.5	0.94%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.132e-02	1.0000	169.0	4.07%	2017.4	4.62%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.109e-02	1.0000	16.0	0.39%	255.2	0.58%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.994e-02	1.0000	1405.0	33.83%	15381.4	35.22%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.956e-02	1.0000	196.0	4.72%	2341.7	5.36%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-2.951e-02	1.0000	378.0	9.10%	4351.1	9.96%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.930e-02	1.0000	259.0	6.24%	3042.8	6.97%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.780e-02	1.0000	1260.0	30.34%	13850.4	31.71%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.627e-02	1.0000	800.0	19.26%	8938.0	20.46%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.567e-02	1.0000	349.0	8.40%	4045.7	9.26%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.409e-02	1.0000	1012.0	24.37%	11223.0	25.69%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.324e-02	1.0000	1111.0	26.75%	12285.4	28.13%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.323e-02	1.0000	17.0	0.41%	276.0	0.63%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.043e-02	1.0000	701.0	16.88%	7898.2	18.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.819e-02	1.0000	7.0	0.17%	143.0	0.33%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.767e-02	1.0000	364.0	8.76%	4241.2	9.71%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.729e-02	1.0000	104.0	2.50%	1330.0	3.05%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.654e-02	1.0000	102.0	2.46%	1308.7	3.00%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.430e-02	1.0000	687.0	16.54%	7784.6	17.82%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-1.401e-02	1.0000	173.0	4.17%	2129.1	4.87%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.379e-02	1.0000	544.0	13.10%	6234.3	14.27%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.367e-02	1.0000	166.0	4.00%	2051.5	4.70%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.358e-02	1.0000	216.0	5.20%	2616.1	5.99%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.341e-02	1.0000	217.0	5.23%	2628.8	6.02%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-1.280e-02	1.0000	931.0	22.42%	10428.4	23.88%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.232e-02	1.0000	458.0	11.03%	5304.6	12.14%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.112e-02	1.0000	3.0	0.07%	87.1	0.20%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.084e-02	1.0000	266.0	6.41%	3191.7	7.31%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.078e-02	1.0000	22.0	0.53%	359.5	0.82%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-9.995e-03	1.0000	483.0	11.63%	5596.6	12.81%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-8.424e-03	1.0000	119.0	2.87%	1537.8	3.52%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-7.968e-03	1.0000	852.0	20.52%	9628.8	22.05%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-7.387e-03	1.0000	92.0	2.22%	1227.1	2.81%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-7.002e-03	1.0000	199.0	4.79%	2464.5	5.64%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-6.932e-03	1.0000	172.0	4.14%	2157.4	4.94%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.704e-03	1.0000	72.0	1.73%	993.5	2.27%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.752e-03	1.0000	172.0	4.14%	2177.5	4.99%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-4.536e-03	1.0000	493.0	11.87%	5772.0	13.21%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.666e-03	1.0000	50.0	1.20%	745.7	1.71%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.332e-03	1.0000	757.0	18.23%	8715.1	19.95%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.810e-03	1.0000	690.0	16.61%	8006.9	18.33%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.710e-03	1.0000	427.0	10.28%	5113.9	11.71%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.591e-03	1.0000	6.0	0.14%	166.4	0.38%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.316e-03	1.0000	44.0	1.06%	699.1	1.60%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.253e-03	1.0000	1404.0	33.81%	15740.0	36.04%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.213e-03	1.0000	6.0	0.14%	170.6	0.39%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-9.900e-04	1.0000	1152.0	27.74%	13065.0	29.91%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-9.430e-04	1.0000	487.0	11.73%	5821.6	13.33%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-9.220e-04	1.0000	781.0	18.81%	9055.3	20.73%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.710e-04	1.0000	245.0	5.90%	3103.6	7.11%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-7.360e-04	1.0000	33.0	0.79%	570.5	1.31%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-6.690e-04	1.0000	252.0	6.07%	3197.5	7.32%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-4.620e-04	1.0000	388.0	9.34%	4761.3	10.90%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-4.530e-04	1.0000	273.0	6.57%	3458.4	7.92%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-2.800e-04	1.0000	1410.0	33.95%	15944.6	36.51%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-2.120e-04	1.0000	679.0	16.35%	8049.6	18.43%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.550e-04	1.0000	368.0	8.86%	4598.8	10.53%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-9.100e-05	1.0000	969.0	23.33%	11285.4	25.84%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.900e-05	1.0000	504.0	12.14%	6198.5	14.19%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-3.600e-05	1.0000	5.0	0.12%	200.8	0.46%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.000e-05	1.0000	1830.0	44.06%	20596.4	47.16%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.800e-05	1.0000	238.0	5.73%	3184.1	7.29%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-2.000e-05	1.0000	306.0	7.37%	3991.4	9.14%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.100e-05	1.0000	521.0	12.55%	6473.9	14.82%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-1.000e-05	1.0000	638.0	15.36%	7789.2	17.83%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.000e-05	1.0000	176.0	4.24%	2489.5	5.70%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-9.000e-06	1.0000	240.0	5.78%	3256.0	7.45%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-6.000e-06	1.0000	151.0	3.64%	2200.4	5.04%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.000e-06	1.0000	73.0	1.76%	1236.9	2.83%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.000e-06	1.0000	534.0	12.86%	6720.3	15.39%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.000e-06	1.0000	511.0	12.30%	6483.8	14.84%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.000e-06	1.0000	1050.0	25.28%	12484.9	28.58%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	123.0	2.96%	1936.1	4.43%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	248.0	5.97%	3489.5	7.99%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-0.000e+00	1.0000	95.0	2.29%	1597.4	3.66%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-0.000e+00	1.0000	433.0	10.43%	5675.4	12.99%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-0.000e+00	1.0000	432.0	10.40%	5707.7	13.07%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	316.0	7.61%	4373.4	10.01%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	1986.0	47.82%	22717.4	52.01%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	640.0	15.41%	8164.0	18.69%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-0.000e+00	1.0000	198.0	4.77%	3115.3	7.13%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	1132.0	27.26%	13894.1	31.81%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-0.000e+00	1.0000	167.0	4.02%	2740.9	6.28%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	581.0	13.99%	7766.6	17.78%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-0.000e+00	1.0000	291.0	7.01%	4425.7	10.13%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-0.000e+00	1.0000	230.0	5.54%	3795.2	8.69%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-0.000e+00	1.0000	223.0	5.37%	3755.5	8.60%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-0.000e+00	1.0000	13.0	0.31%	703.6	1.61%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	0.000e+00	1.0000	648.0	15.60%	15836.4	36.26%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	614.0	14.78%	8810.1	20.17%