Information for 19-GCAGGGAC (Motif 11)

T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C
Reverse Opposite:
T A C G A G C T G T A C A T G C G T A C A G C T A C T G A T G C
p-value:1e0
log p-value:-4.733e-01
Information Content per bp:1.797
Number of Target Sequences with motif119.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif1151.5
Percentage of Background Sequences with motif2.63%
Average Position of motif in Targets105.5 +/- 62.2bp
Average Position of motif in Background102.1 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCAGGGAC
CACAGCAGGGG-
 A C G T A C G T A C G T A C G T T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCAGGGAC--
CCAGGAACAG
 T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C A C G T A C G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Zic2/MA1629.1/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GCAGGGAC
CTCACAGCAGGGGG
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCAGGGAC
CACAGCAGGGGG
 A C G T A C G T A C G T A C G T T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGGGAC--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A C G T A C G T T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAGGGAC--
NRRGGGTCTT
 T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C A C G T A C G T
A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCAGGGAC--
RHHCAGAGAGGB
 A C G T A C G T T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C A C G T A C G T
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

TFDP1/MA1122.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCAGGGAC-
GGGCGGGAAGG
 A C G T A C G T T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C A C G T
T A C G T A C G T A C G G A T C T A C G T A C G A T C G C T G A T G C A T A C G T A C G

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCAGGGAC--
NNGGCAGGTGCNN
 A C G T A C G T A C G T T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C A C G T A C G T
T A C G T A C G C T A G T A C G A T G C T C G A A T C G T A C G G A C T T A C G A T G C G C A T T A C G

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAGGGAC
CHCAGCRGGRGG
 A C G T A C G T A C G T A C G T T A C G G T A C T C G A A C T G T A C G A C T G C T G A A T G C
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G