Information for 9-CTCATAAAAA (Motif 5)

T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A
Reverse Opposite:
A C G T C A G T A C G T A G C T G C A T C T G A A G C T C T A G C T G A A C T G
p-value:1e-4
log p-value:-9.267e+00
Information Content per bp:1.826
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif436.6
Percentage of Background Sequences with motif1.00%
Average Position of motif in Targets108.3 +/- 58.0bp
Average Position of motif in Background104.3 +/- 57.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----CTCATAAAAA--
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CTCATAAAAA
CCYMATAAAA-
 A C G T T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAAA
NCYAATAAAA-
 A C G T T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAAA
GCTCGTAAAAA
 A C G T T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----CTCATAAAAA--
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAA
CYHATAAAAN
 T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAA
GTCGTAAAAT
 T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAA
GTCATAAAAN
 T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAAA
VGCCATAAAA-
 A C G T T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAA
GTCGTAAAAA
 T G A C A G C T G A T C C T G A A G C T C G T A T C G A C G T A G T C A T G C A
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A