#!/bin/bash
# ===============================
# Collect and rename FIMO result files
# ===============================

# Input folders (already exist)
OUT1="AR_full_out"
OUT2="AR_half_out"
OUT3="FOXA1_out"

# Output collection folder
RESULT_DIR="FIMO_results"
mkdir -p "$RESULT_DIR"

echo "📦 Collecting fimo.tsv files..."

# AR_full
if [ -f "$OUT1/fimo.tsv" ]; then
  cp "$OUT1/fimo.tsv" "$RESULT_DIR/fimo_AR_full.tsv"
  echo "✅ Copied $OUT1/fimo.tsv → $RESULT_DIR/fimo_AR_full.tsv"
else
  echo "⚠️  No fimo.tsv found in $OUT1/"
fi

# AR_half
if [ -f "$OUT2/fimo.tsv" ]; then
  cp "$OUT2/fimo.tsv" "$RESULT_DIR/fimo_AR_half.tsv"
  echo "✅ Copied $OUT2/fimo.tsv → $RESULT_DIR/fimo_AR_half.tsv"
else
  echo "⚠️  No fimo.tsv found in $OUT2/"
fi

# FOXA1
if [ -f "$OUT3/fimo.tsv" ]; then
  cp "$OUT3/fimo.tsv" "$RESULT_DIR/fimo_FOXA1.tsv"
  echo "✅ Copied $OUT3/fimo.tsv → $RESULT_DIR/fimo_FOXA1.tsv"
else
  echo "⚠️  No fimo.tsv found in $OUT3/"
fi

echo "🎯 Collection completed. Files are in: $RESULT_DIR/"
ls -lh "$RESULT_DIR"