Database and Motifs High-scoring Motif Occurences Debugging Information Results in TSV Format Results in GFF3 Format


FIMO - Motif search tool

FIMO version 5.3.3, (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE MergedChipseq_peaks.fa
Database contains 64559 sequences, 28693739 residues

MOTIFS FOXA1.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
WAAGTAAACA 10 AAAGTAAACA

Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
WAAGTAAACA FOXA1 chunk0210_85_1 + 1 10 3.28e-06 0.0988 aaaGtaaaca
WAAGTAAACA FOXA1 chunk0161_440_1 + 2 11 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0188_313_1 + 5 14 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0050_63_1 + 6 15 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0006_208_1 + 6 15 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0105_434_1 + 6 15 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0181_290_1 + 7 16 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0173_360_1 - 1 10 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0039_359_1 - 3 12 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0049_70_1 + 13 22 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0182_215_1 - 4 13 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0022_334_1 - 4 13 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0193_386_1 + 14 23 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0039_21_1 + 14 23 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0088_50_1 - 6 15 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0103_235_1 - 6 15 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0174_118_1 - 7 16 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0102_263_1 - 9 18 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0153_432_1 - 9 18 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0095_14_1 - 9 18 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0160_395_1 - 9 18 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0210_89_1 + 19 28 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0158_135_1 - 10 19 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0059_112_1 - 11 20 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0122_210_1 - 11 20 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0126_23_1 - 11 20 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0045_17_1 + 21 30 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0071_127_1 - 12 21 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0198_58_1 + 22 31 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0166_48_1 - 15 24 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0178_302_1 - 15 24 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0174_248_1 + 24 33 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0126_242_1 - 15 24 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0111_282_1 + 25 34 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0031_266_1 + 25 34 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0194_132_1 - 17 26 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0191_339_1 + 26 35 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0196_36_1 + 26 35 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0159_450_1 - 19 28 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0058_156_1 - 20 29 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0030_236_1 - 20 29 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0104_366_1 - 20 29 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0065_109_1 - 21 30 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0134_240_1 + 30 39 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0090_264_1 - 21 30 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0153_309_1 + 30 39 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0208_162_1 - 25 34 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0054_416_1 - 25 34 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0141_401_1 + 35 44 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0082_56_1 + 36 45 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0060_193_1 - 29 38 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0100_137_1 - 29 38 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0099_9_1 + 38 47 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0182_53_1 + 38 47 3.28e-06 0.0988 AAAGTAaaca
WAAGTAAACA FOXA1 chunk0165_75_1 + 40 49 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0115_151_1 + 40 49 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0098_3_1 + 41 50 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0075_32_1 - 33 42 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0164_58_1 - 34 43 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0195_322_1 + 44 53 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0002_108_1 - 35 44 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0108_340_1 - 35 44 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0083_390_1 + 44 53 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0152_11_1 + 45 54 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0030_206_1 - 37 46 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0100_133_1 - 38 47 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0144_158_1 - 38 47 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0038_136_1 + 47 56 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0170_373_1 + 48 57 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0062_25_1 - 39 48 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0047_374_1 + 48 57 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0145_274_1 + 48 57 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0026_213_1 + 49 58 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0030_227_1 - 40 49 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0146_349_1 + 51 60 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0093_2_1 - 43 52 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0200_97_1 + 52 61 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0109_439_1 + 52 61 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0036_448_1 + 52 61 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0082_423_1 + 53 62 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0042_204_1 - 44 53 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0101_181_1 - 46 55 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0046_264_1 - 46 55 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0018_320_1 + 55 64 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0067_445_1 + 55 64 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0023_255_1 - 47 56 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0080_278_1 + 56 65 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0115_170_1 - 47 56 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0051_5_1 + 56 65 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0006_333_1 - 48 57 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0164_259_1 - 49 58 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0149_150_1 + 60 69 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0048_222_1 - 51 60 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0161_21_1 + 60 69 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0132_370_1 + 60 69 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0013_125_1 - 52 61 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0056_227_1 + 62 71 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0075_167_1 - 53 62 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0135_337_1 + 63 72 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0038_254_1 + 63 72 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0172_32_1 - 54 63 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0143_443_1 - 54 63 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0116_93_1 - 54 63 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0042_204_1 - 55 64 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0185_426_1 - 55 64 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0006_34_1 - 56 65 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0053_440_1 + 65 74 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0118_148_1 - 57 66 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0038_21_1 - 58 67 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0094_313_1 - 58 67 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0099_403_1 - 58 67 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0133_273_1 + 68 77 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0034_22_1 + 68 77 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0151_66_1 + 68 77 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0130_162_1 + 69 78 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0186_63_1 - 60 69 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0169_178_1 + 69 78 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0119_175_1 - 61 70 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0012_369_1 + 70 79 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0080_256_1 + 70 79 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0193_182_1 - 62 71 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0009_298_1 + 71 80 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0162_296_1 + 72 81 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0152_424_1 + 73 82 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0054_47_1 + 73 82 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0017_234_1 - 65 74 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0120_219_1 + 75 84 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0033_126_1 - 66 75 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0092_325_1 - 66 75 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0209_16_1 - 67 76 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0092_221_1 + 76 85 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0208_375_1 - 67 76 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0165_383_1 + 76 85 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0154_194_1 + 76 85 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0170_313_1 + 76 85 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0177_8_1 - 67 76 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0128_222_1 + 76 85 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0031_327_1 + 77 86 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0210_88_1 + 77 86 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0055_236_1 - 68 77 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0056_130_1 + 78 87 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0027_182_1 - 69 78 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0068_431_1 - 69 78 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0069_217_1 - 69 78 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0169_115_1 - 70 79 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0178_222_1 + 79 88 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0014_146_1 + 80 89 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0161_230_1 + 80 89 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0158_21_1 + 80 89 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0139_438_1 + 81 90 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0190_397_1 + 81 90 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0138_280_1 + 81 90 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0121_459_1 - 73 82 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0016_38_1 + 82 91 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0067_224_1 + 82 91 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0005_72_1 + 82 91 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0080_409_1 + 82 91 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0035_286_1 + 83 92 3.28e-06 0.0988 taagtaaaCA
WAAGTAAACA FOXA1 chunk0197_171_1 + 83 92 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0023_36_1 - 74 83 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0124_404_1 - 75 84 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0154_309_1 - 76 85 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0170_451_1 + 85 94 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0133_347_1 + 85 94 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0154_79_1 - 76 85 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0178_50_1 + 85 94 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0196_67_1 + 85 94 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0042_336_1 + 86 95 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0115_170_1 - 77 86 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0068_291_1 + 86 95 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0183_106_1 + 86 95 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0130_329_1 + 86 95 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0191_420_1 + 87 96 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0134_318_1 + 87 96 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0007_20_1 + 87 96 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0063_79_1 + 87 96 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0144_367_1 + 88 97 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0021_324_1 + 89 98 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0164_444_1 + 89 98 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0161_81_1 - 80 89 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0183_110_1 + 90 99 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0020_308_1 - 81 90 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0063_263_1 + 90 99 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0125_233_1 + 90 99 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0167_137_1 + 90 99 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0116_42_1 - 81 90 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0178_142_1 - 81 90 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0115_268_1 - 81 90 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0137_139_1 + 91 100 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0030_39_1 - 82 91 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0189_63_1 - 83 92 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0085_56_1 + 92 101 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0206_171_1 - 83 92 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0051_101_1 - 84 93 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0090_105_1 + 94 103 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0037_320_1 - 85 94 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0133_178_1 + 94 103 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0148_143_1 + 95 104 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0156_193_1 - 86 95 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0062_353_1 + 96 105 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0172_69_1 + 96 105 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0169_317_1 + 96 105 3.28e-06 0.0988 AAAGTAAACa
WAAGTAAACA FOXA1 chunk0055_77_1 - 87 96 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0165_271_1 + 96 105 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0008_64_1 - 87 96 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0033_10_1 - 88 97 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0023_6_1 + 97 106 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0131_109_1 - 88 97 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0144_140_1 + 97 106 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0180_390_1 + 97 106 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0158_327_1 + 98 107 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0111_129_1 + 98 107 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0128_108_1 + 98 107 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0112_383_1 - 90 99 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0198_9_1 + 99 108 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0126_385_1 - 90 99 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0099_382_1 - 91 100 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0166_273_1 + 100 109 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0009_427_1 - 91 100 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0163_59_1 - 91 100 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0081_395_1 - 93 102 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0062_213_1 + 102 111 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0211_155_1 + 102 111 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0062_177_1 + 102 111 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0153_231_1 - 93 102 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0198_286_1 - 93 102 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0001_362_1 - 93 102 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0022_4_1 - 94 103 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0186_271_1 + 104 113 3.28e-06 0.0988 aaagtaaaca
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WAAGTAAACA FOXA1 chunk0087_81_1 + 244 253 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0072_151_1 - 235 244 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0006_170_1 + 244 253 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0067_359_1 - 235 244 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0085_388_1 + 245 254 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0027_362_1 + 245 254 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0180_299_1 + 245 254 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0116_242_1 - 236 245 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0072_234_1 + 245 254 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0203_348_1 - 236 245 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0023_264_1 - 236 245 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0121_459_1 + 245 254 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0199_438_1 - 236 245 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0006_241_1 - 237 246 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0135_64_1 - 237 246 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0174_83_1 + 246 255 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0202_338_1 - 237 246 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0033_288_1 + 246 255 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0208_452_1 + 246 255 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0153_175_1 - 237 246 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0142_272_1 - 237 246 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0048_121_1 - 237 246 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0084_284_1 - 238 247 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0014_323_1 - 238 247 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0137_204_1 - 238 247 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0058_79_1 - 238 247 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0006_367_1 + 247 256 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0210_125_1 + 247 256 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0064_320_1 + 248 257 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0113_279_1 + 248 257 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0122_149_1 - 239 248 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0149_270_1 - 239 248 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0194_81_1 - 239 248 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0070_245_1 - 239 248 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0202_406_1 + 248 257 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0189_220_1 + 248 257 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0047_442_1 - 240 249 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0044_338_1 + 249 258 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0121_135_1 - 240 249 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0106_95_1 + 249 258 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0054_136_1 - 240 249 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0028_161_1 + 249 258 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0167_163_1 + 249 258 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0173_359_1 - 240 249 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0019_285_1 + 249 258 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0157_416_1 + 250 259 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0049_218_1 - 241 250 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0140_66_1 + 250 259 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0146_3_1 - 241 250 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0164_451_1 + 250 259 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0155_406_1 + 251 260 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0044_277_1 - 242 251 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0025_361_1 - 242 251 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0159_347_1 - 242 251 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0107_126_1 + 252 261 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0055_247_1 + 252 261 3.28e-06 0.0988 aaagtaaaca
WAAGTAAACA FOXA1 chunk0022_161_1 + 252 261 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0203_57_1 - 243 252 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0128_217_1 + 252 261 3.28e-06 0.0988 TAAGTAAACA
WAAGTAAACA FOXA1 chunk0061_286_1 - 243 252 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0114_175_1 + 253 262 3.28e-06 0.0988 taagtaaaca
WAAGTAAACA FOXA1 chunk0040_114_1 - 244 253 3.28e-06 0.0988 AAAGTAAACA
WAAGTAAACA FOXA1 chunk0178_345_1 + 253 262 3.28e-06 0.0988 AAAGTAAACA
DEBUGGING INFORMATION

Command line: 

fimo --oc test FOXA1.meme MergedChipseq_peaks.fa

Settings: 


  

    output_directory = test
    MEME file name = FOXA1.meme
    sequence file name = MergedChipseq_peaks.fa
  
  

    background file name = --nrdb--
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = false
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 2

This information can be useful in the event you wish to report a problem with the FIMO software.

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