Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 107556)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 107481)	% of Background Sequences with Motif
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1937	-4.462e+03	0.0000	24684.0	22.95%	13435.1	12.50%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1904	-4.385e+03	0.0000	35042.0	32.59%	21903.6	20.38%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1886	-4.343e+03	0.0000	39083.0	36.34%	25424.4	23.66%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1882	-4.335e+03	0.0000	33545.0	31.19%	20710.1	19.27%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1744	-4.017e+03	0.0000	13670.0	12.71%	5902.8	5.49%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1582	-3.643e+03	0.0000	22180.0	20.62%	12391.7	11.53%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1020	-2.350e+03	0.0000	28384.0	26.39%	19291.9	17.95%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-932	-2.147e+03	0.0000	21667.0	20.15%	13952.2	12.98%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-900	-2.075e+03	0.0000	27341.0	25.42%	18885.2	17.57%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-897	-2.066e+03	0.0000	29914.0	27.82%	21145.2	19.68%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-890	-2.050e+03	0.0000	15950.0	14.83%	9475.7	8.82%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-853	-1.964e+03	0.0000	13324.0	12.39%	7550.6	7.03%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-627	-1.444e+03	0.0000	22639.0	21.05%	16042.5	14.93%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-510	-1.175e+03	0.0000	30406.0	28.27%	23616.1	21.98%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-314	-7.250e+02	0.0000	17667.0	16.43%	13375.9	12.45%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-304	-7.022e+02	0.0000	25469.0	23.68%	20503.4	19.08%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-254	-5.855e+02	0.0000	1709.0	1.59%	660.7	0.61%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-204	-4.714e+02	0.0000	38149.0	35.47%	33428.4	31.11%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-178	-4.114e+02	0.0000	3304.0	3.07%	1934.9	1.80%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-176	-4.065e+02	0.0000	54374.0	50.56%	49691.6	46.24%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-174	-4.025e+02	0.0000	47893.0	44.54%	43297.0	40.29%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-171	-3.957e+02	0.0000	50149.0	46.63%	45562.6	42.40%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-158	-3.647e+02	0.0000	15750.0	14.65%	12799.6	11.91%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-146	-3.379e+02	0.0000	22160.0	20.61%	18853.8	17.55%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-145	-3.349e+02	0.0000	22262.0	20.70%	18963.6	17.65%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-120	-2.769e+02	0.0000	2625.0	2.44%	1610.0	1.50%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-117	-2.705e+02	0.0000	809.0	0.75%	317.9	0.30%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-98	-2.268e+02	0.0000	2973.0	2.76%	1973.4	1.84%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-93	-2.152e+02	0.0000	19486.0	18.12%	16968.5	15.79%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-80	-1.845e+02	0.0000	778.0	0.72%	361.6	0.34%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-78	-1.796e+02	0.0000	36973.0	34.38%	34065.4	31.70%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-74	-1.707e+02	0.0000	47905.0	44.55%	44907.1	41.79%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-71	-1.642e+02	0.0000	1665.0	1.55%	1039.4	0.97%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-69	-1.590e+02	0.0000	27214.0	25.31%	24735.0	23.02%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-59	-1.380e+02	0.0000	16034.0	14.91%	14172.3	13.19%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-57	-1.319e+02	0.0000	34313.0	31.91%	31873.8	29.66%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-57	-1.315e+02	0.0000	16820.0	15.64%	14963.7	13.93%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-55	-1.276e+02	0.0000	15206.0	14.14%	13456.8	12.52%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-54	-1.258e+02	0.0000	4998.0	4.65%	3989.5	3.71%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-49	-1.134e+02	0.0000	6613.0	6.15%	5505.9	5.12%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-47	-1.097e+02	0.0000	10405.0	9.68%	9043.0	8.42%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-46	-1.060e+02	0.0000	6991.0	6.50%	5888.3	5.48%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-45	-1.041e+02	0.0000	2444.0	2.27%	1812.4	1.69%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-45	-1.038e+02	0.0000	7613.0	7.08%	6474.9	6.03%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-43	-1.011e+02	0.0000	6072.0	5.65%	5068.4	4.72%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-43	-9.932e+01	0.0000	2057.0	1.91%	1495.0	1.39%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-42	-9.888e+01	0.0000	3560.0	3.31%	2806.1	2.61%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-42	-9.815e+01	0.0000	23836.0	22.16%	21981.1	20.46%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-42	-9.763e+01	0.0000	2033.0	1.89%	1478.5	1.38%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-42	-9.727e+01	0.0000	4383.0	4.08%	3549.7	3.30%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-41	-9.595e+01	0.0000	2926.0	2.72%	2256.4	2.10%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-40	-9.383e+01	0.0000	7526.0	7.00%	6448.1	6.00%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-39	-9.070e+01	0.0000	3033.0	2.82%	2368.3	2.20%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-37	-8.549e+01	0.0000	8788.0	8.17%	7677.5	7.14%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-36	-8.366e+01	0.0000	8031.0	7.47%	6979.5	6.50%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-35	-8.161e+01	0.0000	4593.0	4.27%	3808.7	3.54%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-32	-7.585e+01	0.0000	1185.0	1.10%	818.0	0.76%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-32	-7.583e+01	0.0000	12684.0	11.79%	11439.2	10.65%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-32	-7.568e+01	0.0000	1615.0	1.50%	1180.1	1.10%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-32	-7.525e+01	0.0000	10293.0	9.57%	9168.2	8.53%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-32	-7.394e+01	0.0000	6742.0	6.27%	5834.0	5.43%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-30	-7.126e+01	0.0000	8190.0	7.62%	7209.1	6.71%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-28	-6.670e+01	0.0000	14998.0	13.95%	13739.9	12.79%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-27	-6.293e+01	0.0000	38115.0	35.44%	36386.6	33.86%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-26	-6.155e+01	0.0000	6026.0	5.60%	5242.8	4.88%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-26	-6.082e+01	0.0000	7511.0	6.98%	6642.7	6.18%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-26	-6.030e+01	0.0000	37203.0	34.59%	35522.0	33.06%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-23	-5.413e+01	0.0000	2258.0	2.10%	1814.6	1.69%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-22	-5.144e+01	0.0000	13086.0	12.17%	12049.0	11.21%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-22	-5.085e+01	0.0000	8880.0	8.26%	8019.8	7.46%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-21	-5.005e+01	0.0000	4464.0	4.15%	3856.0	3.59%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-21	-4.887e+01	0.0000	1786.0	1.66%	1413.8	1.32%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-20	-4.776e+01	0.0000	8164.0	7.59%	7363.8	6.85%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-20	-4.773e+01	0.0000	10386.0	9.66%	9488.2	8.83%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-20	-4.746e+01	0.0000	6438.0	5.99%	5727.3	5.33%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-20	-4.721e+01	0.0000	37940.0	35.28%	36450.9	33.92%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-20	-4.689e+01	0.0000	1790.0	1.66%	1424.2	1.33%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-20	-4.650e+01	0.0000	15564.0	14.47%	14499.7	13.49%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-19	-4.528e+01	0.0000	7456.0	6.93%	6710.4	6.24%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-19	-4.478e+01	0.0000	1179.0	1.10%	893.9	0.83%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-19	-4.449e+01	0.0000	5828.0	5.42%	5173.3	4.81%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-18	-4.348e+01	0.0000	13198.0	12.27%	12243.0	11.39%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-18	-4.315e+01	0.0000	3057.0	2.84%	2592.3	2.41%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-18	-4.311e+01	0.0000	4735.0	4.40%	4154.4	3.87%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-18	-4.201e+01	0.0000	34379.0	31.97%	33014.4	30.72%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-17	-4.101e+01	0.0000	7759.0	7.21%	7036.1	6.55%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-17	-4.017e+01	0.0000	25330.0	23.55%	24126.1	22.45%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-17	-3.992e+01	0.0000	6199.0	5.76%	5560.9	5.17%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-17	-3.920e+01	0.0000	6319.0	5.88%	5680.8	5.29%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-16	-3.866e+01	0.0000	9691.0	9.01%	8911.5	8.29%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-16	-3.778e+01	0.0000	4194.0	3.90%	3683.6	3.43%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-16	-3.713e+01	0.0000	568.0	0.53%	393.5	0.37%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-15	-3.662e+01	0.0000	13479.0	12.53%	12597.0	11.72%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-15	-3.578e+01	0.0000	3316.0	3.08%	2875.6	2.68%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-15	-3.572e+01	0.0000	3161.0	2.94%	2731.4	2.54%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-15	-3.473e+01	0.0000	7626.0	7.09%	6968.2	6.48%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-14	-3.443e+01	0.0000	493.0	0.46%	337.7	0.31%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-14	-3.428e+01	0.0000	17401.0	16.18%	16447.8	15.31%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-14	-3.411e+01	0.0000	5393.0	5.01%	4843.8	4.51%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-14	-3.336e+01	0.0000	4067.0	3.78%	3595.1	3.35%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-14	-3.301e+01	0.0000	3857.0	3.59%	3400.9	3.16%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-14	-3.261e+01	0.0000	3689.0	3.43%	3245.9	3.02%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-14	-3.249e+01	0.0000	10115.0	9.41%	9388.2	8.74%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-13	-3.171e+01	0.0000	19733.0	18.35%	18768.1	17.47%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-13	-3.068e+01	0.0000	36411.0	33.86%	35234.1	32.79%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-13	-3.033e+01	0.0000	10356.0	9.63%	9647.7	8.98%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-13	-3.019e+01	0.0000	10192.0	9.48%	9490.2	8.83%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-12	-2.813e+01	0.0000	6133.0	5.70%	5603.5	5.21%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-12	-2.808e+01	0.0000	20610.0	19.16%	19689.5	18.32%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-12	-2.786e+01	0.0000	420.0	0.39%	291.5	0.27%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-11	-2.676e+01	0.0000	5471.0	5.09%	4983.2	4.64%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-11	-2.667e+01	0.0000	690.0	0.64%	524.7	0.49%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-11	-2.618e+01	0.0000	8426.0	7.84%	7831.4	7.29%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-11	-2.600e+01	0.0000	20897.0	19.43%	20008.2	18.62%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-11	-2.571e+01	0.0000	13245.0	12.32%	12518.3	11.65%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-11	-2.558e+01	0.0000	7504.0	6.98%	6948.3	6.47%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-10	-2.522e+01	0.0000	6614.0	6.15%	6095.1	5.67%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-10	-2.498e+01	0.0000	13538.0	12.59%	12815.4	11.93%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-10	-2.493e+01	0.0000	4343.0	4.04%	3924.6	3.65%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-10	-2.414e+01	0.0000	7020.0	6.53%	6498.4	6.05%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-10	-2.380e+01	0.0000	5150.0	4.79%	4705.2	4.38%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-10	-2.364e+01	0.0000	11238.0	10.45%	10593.3	9.86%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-10	-2.307e+01	0.0000	35372.0	32.89%	34370.0	31.98%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-10	-2.305e+01	0.0000	11496.0	10.69%	10853.1	10.10%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-9	-2.285e+01	0.0000	9757.0	9.07%	9164.7	8.53%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-9	-2.267e+01	0.0000	7649.0	7.11%	7123.2	6.63%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-9	-2.265e+01	0.0000	10249.0	9.53%	9645.3	8.98%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-9	-2.234e+01	0.0000	133.0	0.12%	73.4	0.07%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-9	-2.232e+01	0.0000	24036.0	22.35%	23171.8	21.56%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-9	-2.137e+01	0.0000	15875.0	14.76%	15162.5	14.11%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-9	-2.134e+01	0.0000	5059.0	4.70%	4643.0	4.32%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-8	-2.031e+01	0.0000	12648.0	11.76%	12021.1	11.19%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-8	-2.029e+01	0.0000	4109.0	3.82%	3744.9	3.49%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-8	-2.005e+01	0.0000	3784.0	3.52%	3436.1	3.20%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-8	-1.923e+01	0.0000	2399.0	2.23%	2129.7	1.98%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-8	-1.880e+01	0.0000	21613.0	20.10%	20857.5	19.41%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-8	-1.863e+01	0.0000	2609.0	2.43%	2333.0	2.17%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-8	-1.851e+01	0.0000	6889.0	6.41%	6441.2	5.99%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-8	-1.843e+01	0.0000	7615.0	7.08%	7147.0	6.65%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-7	-1.774e+01	0.0000	721.0	0.67%	583.7	0.54%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-7	-1.773e+01	0.0000	14153.0	13.16%	13541.9	12.60%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-7	-1.749e+01	0.0000	2692.0	2.50%	2420.6	2.25%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-7	-1.746e+01	0.0000	7678.0	7.14%	7221.6	6.72%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-7	-1.689e+01	0.0000	7868.0	7.32%	7414.6	6.90%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-7	-1.653e+01	0.0000	6860.0	6.38%	6440.4	5.99%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-7	-1.627e+01	0.0000	1346.0	1.25%	1163.8	1.08%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-6	-1.601e+01	0.0000	3251.0	3.02%	2966.6	2.76%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-6	-1.532e+01	0.0000	10112.0	9.40%	9628.4	8.96%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-6	-1.527e+01	0.0000	6796.0	6.32%	6396.6	5.95%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-6	-1.527e+01	0.0000	2243.0	2.09%	2013.5	1.87%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-6	-1.516e+01	0.0000	25897.0	24.08%	25178.4	23.43%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-6	-1.507e+01	0.0000	1398.0	1.30%	1219.6	1.13%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-6	-1.496e+01	0.0000	303.0	0.28%	224.1	0.21%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-6	-1.496e+01	0.0000	3577.0	3.33%	3289.9	3.06%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-6	-1.454e+01	0.0000	1614.0	1.50%	1425.2	1.33%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-6	-1.440e+01	0.0000	1965.0	1.83%	1757.1	1.64%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-6	-1.428e+01	0.0000	17038.0	15.84%	16450.2	15.31%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-6	-1.389e+01	0.0000	721.0	0.67%	600.1	0.56%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-6	-1.384e+01	0.0000	679.0	0.63%	562.0	0.52%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-5	-1.364e+01	0.0000	23513.0	21.86%	22860.7	21.27%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-5	-1.356e+01	0.0000	99.0	0.09%	60.0	0.06%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-5	-1.332e+01	0.0000	30558.0	28.42%	29851.0	27.78%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-5	-1.308e+01	0.0000	49899.0	46.40%	49109.1	45.70%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-5	-1.303e+01	0.0000	3595.0	3.34%	3328.4	3.10%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-5	-1.297e+01	0.0000	4877.0	4.54%	4567.5	4.25%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-5	-1.283e+01	0.0000	5072.0	4.72%	4758.7	4.43%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-5	-1.280e+01	0.0000	7400.0	6.88%	7023.7	6.54%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-5	-1.261e+01	0.0000	16285.0	15.14%	15748.5	14.66%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-5	-1.211e+01	0.0000	3967.0	3.69%	3698.9	3.44%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-5	-1.188e+01	0.0000	9827.0	9.14%	9414.5	8.76%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-5	-1.181e+01	0.0000	1294.0	1.20%	1144.7	1.07%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-4	-1.119e+01	0.0000	2364.0	2.20%	2166.1	2.02%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-4	-1.117e+01	0.0000	54445.0	50.63%	53717.4	49.99%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-4	-1.082e+01	0.0001	2433.0	2.26%	2236.8	2.08%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-4	-1.076e+01	0.0001	13043.0	12.13%	12599.7	11.73%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-4	-1.062e+01	0.0001	264.0	0.25%	203.9	0.19%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-1.026e+01	0.0001	907.0	0.84%	792.6	0.74%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-4	-1.024e+01	0.0001	569.0	0.53%	479.1	0.45%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-4	-1.011e+01	0.0001	3431.0	3.19%	3206.3	2.98%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-4	-1.010e+01	0.0001	8626.0	8.02%	8273.2	7.70%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-9.795e+00	0.0001	1620.0	1.51%	1469.9	1.37%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-4	-9.750e+00	0.0001	37.0	0.03%	18.7	0.02%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-4	-9.457e+00	0.0002	32976.0	30.66%	32381.9	30.13%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-4	-9.288e+00	0.0002	5204.0	4.84%	4941.4	4.60%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-3	-9.121e+00	0.0003	4200.0	3.91%	3966.1	3.69%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-3	-9.069e+00	0.0003	4451.0	4.14%	4211.1	3.92%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-3	-8.997e+00	0.0003	2312.0	2.15%	2140.2	1.99%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-8.270e+00	0.0006	2619.0	2.44%	2445.1	2.28%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-8.260e+00	0.0006	18483.0	17.19%	18042.9	16.79%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-3	-8.234e+00	0.0006	3303.0	3.07%	3108.9	2.89%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-3	-8.231e+00	0.0006	1396.0	1.30%	1270.3	1.18%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-3	-8.062e+00	0.0007	2232.0	2.08%	2074.8	1.93%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-3	-8.034e+00	0.0007	2591.0	2.41%	2421.5	2.25%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-3	-7.546e+00	0.0012	2128.0	1.98%	1980.5	1.84%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-3	-7.437e+00	0.0013	1506.0	1.40%	1383.5	1.29%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-3	-7.238e+00	0.0016	14443.0	13.43%	14078.5	13.10%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-7.231e+00	0.0016	4174.0	3.88%	3972.5	3.70%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-7.214e+00	0.0016	7293.0	6.78%	7028.1	6.54%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-3	-7.129e+00	0.0018	3115.0	2.90%	2942.4	2.74%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-3	-6.919e+00	0.0022	23577.0	21.92%	23141.7	21.54%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-2	-6.630e+00	0.0029	11241.0	10.45%	10934.0	10.18%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-2	-6.623e+00	0.0029	23429.0	21.79%	23006.7	21.41%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-6.537e+00	0.0031	1024.0	0.95%	931.6	0.87%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-6.292e+00	0.0040	1713.0	1.59%	1595.9	1.49%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-2	-6.017e+00	0.0052	15572.0	14.48%	15237.2	14.18%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-2	-5.988e+00	0.0054	3178.0	2.96%	3022.3	2.81%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-5.875e+00	0.0060	534.0	0.50%	472.2	0.44%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-5.806e+00	0.0064	8316.0	7.73%	8071.3	7.51%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-2	-5.700e+00	0.0070	9676.0	9.00%	9416.5	8.76%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-5.675e+00	0.0072	558.0	0.52%	496.3	0.46%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-2	-5.540e+00	0.0082	26715.0	24.84%	26319.5	24.49%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-2	-5.540e+00	0.0082	6769.0	6.29%	6554.8	6.10%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.429e+00	0.0091	3090.0	2.87%	2946.4	2.74%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-2	-5.389e+00	0.0094	2993.0	2.78%	2852.3	2.65%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-5.369e+00	0.0095	2638.0	2.45%	2506.8	2.33%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-2	-5.352e+00	0.0097	6441.0	5.99%	6236.1	5.80%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-2	-5.327e+00	0.0099	6614.0	6.15%	6408.0	5.96%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-2	-5.307e+00	0.0100	3599.0	3.35%	3446.2	3.21%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-5.279e+00	0.0102	19606.0	18.23%	19267.8	17.93%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-2	-5.082e+00	0.0124	5430.0	5.05%	5248.2	4.88%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-2	-5.049e+00	0.0128	13682.0	12.72%	13401.7	12.47%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-2	-5.042e+00	0.0128	9924.0	9.23%	9682.9	9.01%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-5.008e+00	0.0132	8756.0	8.14%	8529.8	7.94%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-5.005e+00	0.0132	880.0	0.82%	808.8	0.75%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-4.665e+00	0.0184	3507.0	3.26%	3369.9	3.14%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-4.573e+00	0.0200	698.0	0.65%	638.1	0.59%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-4.573e+00	0.0200	698.0	0.65%	638.1	0.59%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-4.440e+00	0.0228	2483.0	2.31%	2371.3	2.21%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-4.437e+00	0.0228	16636.0	15.47%	16356.8	15.22%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-4.399e+00	0.0235	16736.0	15.56%	16457.6	15.32%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-4.381e+00	0.0238	12614.0	11.73%	12369.4	11.51%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-4.351e+00	0.0245	798.0	0.74%	736.5	0.69%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-4.319e+00	0.0251	2448.0	2.28%	2339.9	2.18%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-4.248e+00	0.0269	28731.0	26.72%	28392.3	26.42%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-4.119e+00	0.0304	1221.0	1.14%	1147.3	1.07%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-4.055e+00	0.0323	674.0	0.63%	620.2	0.58%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-4.054e+00	0.0323	2888.0	2.69%	2775.3	2.58%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-1	-4.013e+00	0.0334	14787.0	13.75%	14540.8	13.53%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-3.933e+00	0.0361	953.0	0.89%	891.0	0.83%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.663e+00	0.0470	283.0	0.26%	251.7	0.23%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.536e+00	0.0532	355.0	0.33%	320.2	0.30%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.496e+00	0.0551	1442.0	1.34%	1371.5	1.28%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-3.482e+00	0.0557	101.0	0.09%	84.0	0.08%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.427e+00	0.0586	10867.0	10.11%	10677.8	9.94%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-1	-3.411e+00	0.0593	11199.0	10.41%	11007.5	10.24%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-1	-3.344e+00	0.0631	9292.0	8.64%	9119.0	8.49%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.247e+00	0.0690	1202.0	1.12%	1141.4	1.06%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.247e+00	0.0690	1202.0	1.12%	1141.4	1.06%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-1	-3.087e+00	0.0806	16371.0	15.22%	16160.8	15.04%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.029e+00	0.0851	4111.0	3.82%	4004.2	3.73%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-3.016e+00	0.0859	8811.0	8.19%	8656.2	8.06%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.999e+00	0.0870	1600.0	1.49%	1534.8	1.43%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-2.987e+00	0.0877	3825.0	3.56%	3723.1	3.46%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.948e+00	0.0909	328.0	0.31%	299.2	0.28%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.884e+00	0.0965	4904.0	4.56%	4792.3	4.46%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-1	-2.656e+00	0.1207	4885.0	4.54%	4781.3	4.45%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-2.479e+00	0.1435	23830.0	22.16%	23624.5	21.98%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.452e+00	0.1468	422.0	0.39%	394.7	0.37%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-2.401e+00	0.1540	48.0	0.04%	39.2	0.04%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.249e+00	0.1786	430.0	0.40%	404.0	0.38%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.246e+00	0.1786	1502.0	1.40%	1454.0	1.35%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-2.109e+00	0.2039	12456.0	11.58%	12324.7	11.47%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.080e+00	0.2090	3549.0	3.30%	3479.4	3.24%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.005e+00	0.2244	12792.0	11.90%	12665.8	11.79%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.004e+00	0.2244	427.0	0.40%	404.2	0.38%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.989e+00	0.2264	84.0	0.08%	74.4	0.07%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.966e+00	0.2307	86.0	0.08%	76.6	0.07%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.945e+00	0.2347	9225.0	8.58%	9120.9	8.49%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.900e+00	0.2446	2214.0	2.06%	2164.8	2.01%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.801e+00	0.2692	1943.0	1.81%	1899.8	1.77%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.776e+00	0.2749	944.0	0.88%	914.1	0.85%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.736e+00	0.2851	41.0	0.04%	35.6	0.03%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.732e+00	0.2851	56.0	0.05%	49.6	0.05%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.711e+00	0.2900	2190.0	2.04%	2146.3	2.00%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.701e+00	0.2920	6032.0	5.61%	5959.6	5.55%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.676e+00	0.2984	6598.0	6.14%	6524.0	6.07%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.642e+00	0.3077	3495.0	3.25%	3442.5	3.20%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.630e+00	0.3100	1402.0	1.30%	1369.5	1.27%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.629e+00	0.3100	4111.0	3.82%	4054.8	3.77%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.580e+00	0.3237	1024.0	0.95%	997.1	0.93%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.557e+00	0.3299	29820.0	27.73%	29679.8	27.62%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.544e+00	0.3331	24.0	0.02%	20.2	0.02%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.542e+00	0.3331	7908.0	7.35%	7834.3	7.29%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.520e+00	0.3390	976.0	0.91%	951.0	0.89%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.504e+00	0.3432	6734.0	6.26%	6668.9	6.21%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.462e+00	0.3565	3890.0	3.62%	3842.5	3.58%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.384e+00	0.3840	1479.0	1.38%	1452.8	1.35%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.334e+00	0.4025	455.0	0.42%	441.9	0.41%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.333e+00	0.4025	1661.0	1.54%	1634.4	1.52%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.302e+00	0.4126	6839.0	6.36%	6785.9	6.31%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.282e+00	0.4195	5485.0	5.10%	5438.8	5.06%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.261e+00	0.4270	3839.0	3.57%	3801.8	3.54%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.191e+00	0.4566	5378.0	5.00%	5337.9	4.97%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.131e+00	0.4827	3562.0	3.31%	3532.8	3.29%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.088e+00	0.5027	403.0	0.37%	394.7	0.37%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.086e+00	0.5027	6192.0	5.76%	6155.9	5.73%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.059e+00	0.5136	10631.0	9.89%	10584.5	9.85%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.042e+00	0.5208	604.0	0.56%	595.0	0.55%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.011e+00	0.5355	24.0	0.02%	22.8	0.02%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.006e+00	0.5364	7230.0	6.72%	7196.7	6.70%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.001e+00	0.5373	363.0	0.34%	356.6	0.33%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-9.919e-01	0.5403	2897.0	2.69%	2878.0	2.68%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.791e-01	0.5455	2033.0	1.89%	2017.7	1.88%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-9.390e-01	0.5660	853.0	0.79%	845.0	0.79%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.126e-01	0.5792	2975.0	2.77%	2959.4	2.75%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.837e-01	0.5942	401.0	0.37%	396.8	0.37%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-8.504e-01	0.6123	348.0	0.32%	344.7	0.32%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-8.390e-01	0.6174	217.0	0.20%	214.5	0.20%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.353e-01	0.6176	1540.0	1.43%	1532.4	1.43%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-8.156e-01	0.6279	288.0	0.27%	285.0	0.27%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-7.660e-01	0.6577	8810.0	8.19%	8795.0	8.18%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.618e-01	0.6583	57.0	0.05%	56.4	0.05%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-7.454e-01	0.6671	9941.0	9.24%	9927.4	9.24%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.062e-01	0.6916	6996.0	6.51%	6989.8	6.50%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.928e-01	0.6986	10063.0	9.36%	10055.9	9.36%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.114e-01	0.7555	2362.0	2.20%	2365.3	2.20%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.966e-01	0.7643	441.0	0.41%	443.2	0.41%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-5.843e-01	0.7714	317.0	0.29%	319.4	0.30%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-5.755e-01	0.7758	6780.0	6.30%	6787.8	6.32%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-5.740e-01	0.7758	251.0	0.23%	253.2	0.24%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-5.417e-01	0.7974	1264.0	1.18%	1270.8	1.18%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.399e-01	0.7974	14185.0	13.19%	14197.5	13.21%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.931e-01	0.8319	3266.0	3.04%	3279.9	3.05%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.517e-01	0.8645	15419.0	14.34%	15447.0	14.37%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.480e-01	0.8650	6924.0	6.44%	6947.7	6.47%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-4.271e-01	0.8806	193.0	0.18%	198.2	0.18%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-4.230e-01	0.8815	8078.0	7.51%	8106.5	7.54%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.183e-01	0.8829	1683.0	1.56%	1698.5	1.58%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-4.086e-01	0.8888	9537.0	8.87%	9569.3	8.91%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.030e-01	0.8911	1651.0	1.54%	1667.2	1.55%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-4.012e-01	0.8911	4478.0	4.16%	4503.6	4.19%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.911e-01	0.8963	350.0	0.33%	358.2	0.33%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-3.897e-01	0.8963	52.0	0.05%	55.9	0.05%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-3.767e-01	0.9039	5712.0	5.31%	5743.3	5.34%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.555e-01	0.9204	4210.0	3.91%	4240.2	3.95%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-3.554e-01	0.9204	3029.0	2.82%	3055.1	2.84%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.491e-01	0.9209	37.0	0.03%	40.3	0.04%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-3.188e-01	0.9464	3448.0	3.21%	3480.3	3.24%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.180e-01	0.9464	147.0	0.14%	154.2	0.14%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.709e-01	0.9870	475.0	0.44%	490.9	0.46%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.687e-01	0.9870	758.0	0.70%	777.7	0.72%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.587e-01	0.9933	2094.0	1.95%	2126.4	1.98%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.563e-01	0.9933	319.0	0.30%	332.2	0.31%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.528e-01	0.9934	673.0	0.63%	692.7	0.64%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.485e-01	0.9948	652.0	0.61%	671.9	0.63%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-2.412e-01	0.9991	4857.0	4.52%	4907.0	4.57%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.322e-01	1.0000	158.0	0.15%	168.8	0.16%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.299e-01	1.0000	2419.0	2.25%	2457.8	2.29%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.281e-01	1.0000	2386.0	2.22%	2424.4	2.26%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.256e-01	1.0000	17259.0	16.05%	17346.6	16.14%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.235e-01	1.0000	1208.0	1.12%	1236.8	1.15%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.133e-01	1.0000	2012.0	1.87%	2049.1	1.91%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-2.079e-01	1.0000	29869.0	27.77%	29977.0	27.90%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.072e-01	1.0000	2148.0	2.00%	2187.3	2.04%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.823e-01	1.0000	4175.0	3.88%	4233.8	3.94%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.796e-01	1.0000	1834.0	1.71%	1874.6	1.74%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.676e-01	1.0000	739.0	0.69%	766.6	0.71%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.614e-01	1.0000	1354.0	1.26%	1391.7	1.30%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.573e-01	1.0000	2170.0	2.02%	2217.7	2.06%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.441e-01	1.0000	162.0	0.15%	176.6	0.16%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.390e-01	1.0000	179.0	0.17%	194.3	0.18%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.086e-01	1.0000	1950.0	1.81%	2004.5	1.87%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.018e-01	1.0000	14078.0	13.09%	14211.2	13.22%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-9.870e-02	1.0000	3492.0	3.25%	3567.0	3.32%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-9.514e-02	1.0000	28250.0	26.27%	28421.9	26.45%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.071e-02	1.0000	3054.0	2.84%	3126.7	2.91%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-8.834e-02	1.0000	871.0	0.81%	911.7	0.85%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.667e-02	1.0000	690.0	0.64%	726.7	0.68%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-8.579e-02	1.0000	3957.0	3.68%	4040.5	3.76%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.536e-02	1.0000	804.0	0.75%	843.7	0.79%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-8.459e-02	1.0000	2549.0	2.37%	2617.9	2.44%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-8.199e-02	1.0000	587.0	0.55%	621.5	0.58%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-8.173e-02	1.0000	16308.0	15.16%	16462.5	15.32%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-7.172e-02	1.0000	8378.0	7.79%	8502.9	7.91%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-7.049e-02	1.0000	4853.0	4.51%	4951.3	4.61%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.195e-02	1.0000	11953.0	11.11%	12113.2	11.27%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.217e-02	1.0000	11428.0	10.63%	11595.7	10.79%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-3.560e-02	1.0000	230.0	0.21%	258.1	0.24%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.503e-02	1.0000	4123.0	3.83%	4235.6	3.94%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-3.016e-02	1.0000	10800.0	10.04%	10978.6	10.22%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.925e-02	1.0000	274.0	0.25%	306.4	0.29%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.726e-02	1.0000	753.0	0.70%	806.2	0.75%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.446e-02	1.0000	894.0	0.83%	953.5	0.89%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.114e-02	1.0000	13611.0	12.66%	13823.8	12.86%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.114e-02	1.0000	2021.0	1.88%	2111.2	1.96%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.099e-02	1.0000	1227.0	1.14%	1298.9	1.21%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.009e-02	1.0000	385.0	0.36%	426.5	0.40%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.806e-02	1.0000	11557.0	10.75%	11762.8	10.95%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.720e-02	1.0000	275.0	0.26%	311.6	0.29%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.432e-02	1.0000	2994.0	2.78%	3111.9	2.90%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.320e-02	1.0000	8805.0	8.19%	8999.4	8.37%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.191e-02	1.0000	1496.0	1.39%	1583.0	1.47%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.191e-02	1.0000	4159.0	3.87%	4300.2	4.00%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.154e-02	1.0000	16878.0	15.69%	17137.6	15.95%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-8.085e-03	1.0000	807.0	0.75%	876.0	0.82%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-5.762e-03	1.0000	561.0	0.52%	622.5	0.58%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-3.356e-03	1.0000	3847.0	3.58%	4011.7	3.73%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.663e-03	1.0000	1645.0	1.53%	1758.7	1.64%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.503e-03	1.0000	9935.0	9.24%	10211.9	9.50%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-9.990e-04	1.0000	2452.0	2.28%	2604.8	2.42%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-8.320e-04	1.0000	9084.0	8.45%	9366.4	8.72%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.860e-04	1.0000	60262.0	56.04%	60743.1	56.53%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-3.860e-04	1.0000	15034.0	13.98%	15407.9	14.34%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.550e-04	1.0000	30640.0	28.49%	31132.0	28.97%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.220e-04	1.0000	3283.0	3.05%	3482.4	3.24%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-9.300e-05	1.0000	5989.0	5.57%	6269.8	5.83%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.600e-05	1.0000	289.0	0.27%	359.8	0.33%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.400e-05	1.0000	2034.0	1.89%	2212.2	2.06%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.300e-05	1.0000	8140.0	7.57%	8478.7	7.89%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-3.500e-05	1.0000	3370.0	3.13%	3599.1	3.35%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.000e-06	1.0000	2741.0	2.55%	2975.4	2.77%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.000e-06	1.0000	2868.0	2.67%	3118.5	2.90%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.000e-06	1.0000	36202.0	33.66%	36899.2	34.34%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.000e-06	1.0000	17603.0	16.37%	18174.1	16.91%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-0.000e+00	1.0000	1068.0	0.99%	1235.6	1.15%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	6561.0	6.10%	6956.2	6.47%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-0.000e+00	1.0000	8248.0	7.67%	8726.0	8.12%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-0.000e+00	1.0000	1511.0	1.41%	1732.4	1.61%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-0.000e+00	1.0000	12660.0	11.77%	13240.8	12.32%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-0.000e+00	1.0000	11714.0	10.89%	12289.1	11.44%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-0.000e+00	1.0000	6131.0	5.70%	6571.7	6.12%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	10005.0	9.30%	10562.6	9.83%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-0.000e+00	1.0000	10653.0	9.91%	11236.3	10.46%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-0.000e+00	1.0000	872.0	0.81%	1059.8	0.99%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	8807.0	8.19%	9373.8	8.72%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-0.000e+00	1.0000	4313.0	4.01%	4765.7	4.43%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	7447.0	6.92%	8052.1	7.49%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	23414.0	21.77%	24391.9	22.70%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	184.0	0.17%	314.1	0.29%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	25602.0	23.81%	27017.6	25.14%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	12578.0	11.70%	13513.8	12.58%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	7013.0	6.52%	8006.6	7.45%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	7935.0	7.38%	8908.7	8.29%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	21390.0	19.89%	22567.5	21.00%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	5368.0	4.99%	6441.8	5.99%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	29655.0	27.58%	30937.4	28.79%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	18789.0	17.47%	20255.7	18.85%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	2941.0	2.73%	3925.7	3.65%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	726.0	0.68%	994.7	0.93%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	905.0	0.84%	1236.3	1.15%