Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 282665)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 282451)	% of Background Sequences with Motif
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-2053	-4.729e+03	0.0000	26938.0	9.53%	14292.0	5.06%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1999	-4.604e+03	0.0000	50982.0	18.04%	33408.0	11.83%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1723	-3.969e+03	0.0000	73256.0	25.92%	53871.3	19.07%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1718	-3.957e+03	0.0000	82969.0	29.36%	62625.3	22.17%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1632	-3.759e+03	0.0000	70023.0	24.78%	51471.8	18.22%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1482	-3.414e+03	0.0000	45819.0	16.21%	31207.9	11.05%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1228	-2.828e+03	0.0000	35604.0	12.60%	23762.2	8.41%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1213	-2.795e+03	0.0000	62863.0	22.24%	47412.3	16.78%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1092	-2.516e+03	0.0000	28217.0	9.98%	18253.6	6.46%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1074	-2.475e+03	0.0000	46928.0	16.60%	34136.2	12.08%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-971	-2.238e+03	0.0000	59874.0	21.18%	46228.6	16.37%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-886	-2.042e+03	0.0000	65983.0	23.35%	52362.4	18.54%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-720	-1.659e+03	0.0000	3284.0	1.16%	989.7	0.35%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-589	-1.357e+03	0.0000	71811.0	25.41%	60207.9	21.31%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-574	-1.324e+03	0.0000	49731.0	17.60%	39895.8	14.12%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-503	-1.159e+03	0.0000	3237.0	1.15%	1216.2	0.43%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-359	-8.287e+02	0.0000	43122.0	15.26%	35728.7	12.65%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-238	-5.486e+02	0.0000	58605.0	20.74%	51682.3	18.30%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-235	-5.433e+02	0.0000	8136.0	2.88%	5545.6	1.96%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-198	-4.577e+02	0.0000	91410.0	32.34%	83985.0	29.73%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-181	-4.168e+02	0.0000	117032.0	41.41%	109500.5	38.77%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-171	-3.950e+02	0.0000	121979.0	43.16%	114592.3	40.57%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-166	-3.823e+02	0.0000	2881.0	1.02%	1648.3	0.58%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-157	-3.622e+02	0.0000	133040.0	47.07%	125885.6	44.57%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-142	-3.291e+02	0.0000	7715.0	2.73%	5704.4	2.02%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-137	-3.161e+02	0.0000	36396.0	12.88%	32085.3	11.36%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-131	-3.031e+02	0.0000	53064.0	18.78%	48086.3	17.02%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-97	-2.242e+02	0.0000	51863.0	18.35%	47611.4	16.86%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-89	-2.069e+02	0.0000	40979.0	14.50%	37283.2	13.20%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-83	-1.914e+02	0.0000	45687.0	16.16%	41958.9	14.85%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-82	-1.910e+02	0.0000	90556.0	32.04%	85754.3	30.36%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-67	-1.562e+02	0.0000	99128.0	35.07%	94675.0	33.52%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-67	-1.544e+02	0.0000	12289.0	4.35%	10492.6	3.71%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-64	-1.481e+02	0.0000	65949.0	23.33%	62144.3	22.00%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-64	-1.476e+02	0.0000	40614.0	14.37%	37498.4	13.28%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-63	-1.469e+02	0.0000	3546.0	1.25%	2634.0	0.93%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-62	-1.434e+02	0.0000	38416.0	13.59%	35419.0	12.54%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-59	-1.372e+02	0.0000	16410.0	5.81%	14448.9	5.12%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-59	-1.369e+02	0.0000	17468.0	6.18%	15447.9	5.47%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-58	-1.354e+02	0.0000	18862.0	6.67%	16775.2	5.94%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-57	-1.316e+02	0.0000	7261.0	2.57%	5992.8	2.12%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-57	-1.313e+02	0.0000	15126.0	5.35%	13282.9	4.70%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-56	-1.311e+02	0.0000	118100.0	41.79%	113863.3	40.31%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-54	-1.247e+02	0.0000	24657.0	8.72%	22376.2	7.92%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-54	-1.247e+02	0.0000	17608.0	6.23%	15670.1	5.55%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-54	-1.244e+02	0.0000	99219.0	35.11%	95245.4	33.72%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-51	-1.197e+02	0.0000	11341.0	4.01%	9817.0	3.48%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-51	-1.193e+02	0.0000	20293.0	7.18%	18261.9	6.47%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-50	-1.159e+02	0.0000	39072.0	13.82%	36356.8	12.87%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-49	-1.146e+02	0.0000	19027.0	6.73%	17096.0	6.05%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-48	-1.111e+02	0.0000	21861.0	7.73%	19827.7	7.02%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-44	-1.020e+02	0.0000	4783.0	1.69%	3881.9	1.37%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-42	-9.751e+01	0.0000	32151.0	11.38%	29869.0	10.57%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-41	-9.668e+01	0.0000	59782.0	21.15%	56822.6	20.12%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-41	-9.605e+01	0.0000	28194.0	9.98%	26061.1	9.23%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-41	-9.511e+01	0.0000	11221.0	3.97%	9866.1	3.49%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-41	-9.472e+01	0.0000	35734.0	12.64%	33374.5	11.82%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-40	-9.395e+01	0.0000	20596.0	7.29%	18778.8	6.65%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-40	-9.333e+01	0.0000	13761.0	4.87%	12274.2	4.35%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-40	-9.236e+01	0.0000	36417.0	12.88%	34067.2	12.06%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-39	-9.121e+01	0.0000	6718.0	2.38%	5697.3	2.02%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-39	-9.106e+01	0.0000	20863.0	7.38%	19062.7	6.75%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-38	-8.752e+01	0.0000	19262.0	6.82%	17563.8	6.22%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-37	-8.750e+01	0.0000	15263.0	5.40%	13747.2	4.87%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-37	-8.540e+01	0.0000	88729.0	31.39%	85542.1	30.28%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-36	-8.366e+01	0.0000	34484.0	12.20%	32302.4	11.44%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-35	-8.248e+01	0.0000	66521.0	23.54%	63677.5	22.54%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-34	-7.849e+01	0.0000	4887.0	1.73%	4083.4	1.45%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-33	-7.801e+01	0.0000	15423.0	5.46%	13984.5	4.95%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-33	-7.774e+01	0.0000	16914.0	5.98%	15411.1	5.46%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-33	-7.667e+01	0.0000	3817.0	1.35%	3119.7	1.10%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-32	-7.511e+01	0.0000	14061.0	4.98%	12712.1	4.50%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-32	-7.422e+01	0.0000	21744.0	7.69%	20087.0	7.11%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-31	-7.352e+01	0.0000	18284.0	6.47%	16766.7	5.94%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-31	-7.257e+01	0.0000	20028.0	7.09%	18452.7	6.53%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-31	-7.192e+01	0.0000	18479.0	6.54%	16970.5	6.01%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-31	-7.189e+01	0.0000	14701.0	5.20%	13352.1	4.73%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-30	-7.123e+01	0.0000	20235.0	7.16%	18666.1	6.61%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-30	-6.951e+01	0.0000	8504.0	3.01%	7496.7	2.65%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-29	-6.751e+01	0.0000	86816.0	30.72%	84006.7	29.74%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-28	-6.665e+01	0.0000	22945.0	8.12%	21334.8	7.55%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-28	-6.590e+01	0.0000	577.0	0.20%	348.9	0.12%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-28	-6.485e+01	0.0000	52357.0	18.52%	50063.9	17.72%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-27	-6.411e+01	0.0000	13102.0	4.64%	11899.4	4.21%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-27	-6.376e+01	0.0000	16857.0	5.96%	15499.3	5.49%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-27	-6.375e+01	0.0000	7852.0	2.78%	6925.9	2.45%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-27	-6.315e+01	0.0000	44481.0	15.74%	42366.1	15.00%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-27	-6.244e+01	0.0000	17044.0	6.03%	15693.2	5.56%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-26	-6.215e+01	0.0000	1319.0	0.47%	963.5	0.34%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-26	-6.121e+01	0.0000	17085.0	6.04%	15746.8	5.57%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-26	-6.055e+01	0.0000	11242.0	3.98%	10159.5	3.60%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-25	-5.847e+01	0.0000	19948.0	7.06%	18538.4	6.56%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-25	-5.828e+01	0.0000	26496.0	9.37%	24886.3	8.81%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-24	-5.722e+01	0.0000	94735.0	33.52%	92087.1	32.60%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-24	-5.653e+01	0.0000	50953.0	18.03%	48838.6	17.29%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-24	-5.639e+01	0.0000	6734.0	2.38%	5928.9	2.10%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-23	-5.396e+01	0.0000	11272.0	3.99%	10249.1	3.63%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-23	-5.340e+01	0.0000	25558.0	9.04%	24044.5	8.51%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-22	-5.272e+01	0.0000	9706.0	3.43%	8768.5	3.10%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-22	-5.266e+01	0.0000	6977.0	2.47%	6184.1	2.19%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-22	-5.169e+01	0.0000	10283.0	3.64%	9327.4	3.30%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-21	-5.059e+01	0.0000	5136.0	1.82%	4472.1	1.58%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-21	-5.016e+01	0.0000	4536.0	1.60%	3916.5	1.39%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-21	-4.996e+01	0.0000	27745.0	9.82%	26225.6	9.28%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-21	-4.979e+01	0.0000	7634.0	2.70%	6827.0	2.42%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-21	-4.966e+01	0.0000	7822.0	2.77%	7006.6	2.48%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-21	-4.935e+01	0.0000	15552.0	5.50%	14406.8	5.10%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-20	-4.698e+01	0.0000	36229.0	12.82%	34567.9	12.24%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-20	-4.622e+01	0.0000	22508.0	7.96%	21184.9	7.50%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-20	-4.613e+01	0.0000	20593.0	7.29%	19325.3	6.84%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-19	-4.548e+01	0.0000	20431.0	7.23%	19178.0	6.79%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-19	-4.531e+01	0.0000	34542.0	12.22%	32945.3	11.66%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-19	-4.514e+01	0.0000	19217.0	6.80%	18004.9	6.37%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-19	-4.503e+01	0.0000	41078.0	14.53%	39360.3	13.93%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-19	-4.434e+01	0.0000	29488.0	10.43%	28018.0	9.92%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-19	-4.415e+01	0.0000	10969.0	3.88%	10058.0	3.56%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-19	-4.399e+01	0.0000	2646.0	0.94%	2208.3	0.78%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-19	-4.393e+01	0.0000	10594.0	3.75%	9701.8	3.43%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-18	-4.342e+01	0.0000	48705.0	17.23%	46893.2	16.60%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-18	-4.300e+01	0.0000	1118.0	0.40%	845.6	0.30%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-18	-4.288e+01	0.0000	1961.0	0.69%	1592.2	0.56%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-18	-4.280e+01	0.0000	27898.0	9.87%	26491.2	9.38%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-18	-4.268e+01	0.0000	21308.0	7.54%	20070.1	7.11%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-18	-4.263e+01	0.0000	284.0	0.10%	160.0	0.06%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-18	-4.168e+01	0.0000	25090.0	8.88%	23769.1	8.41%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-17	-4.098e+01	0.0000	11179.0	3.96%	10294.5	3.64%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-17	-4.073e+01	0.0000	33280.0	11.78%	31794.9	11.26%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-17	-3.949e+01	0.0000	7912.0	2.80%	7182.8	2.54%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-17	-3.930e+01	0.0000	1053.0	0.37%	800.4	0.28%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-16	-3.898e+01	0.0000	1000.0	0.35%	755.4	0.27%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-16	-3.875e+01	0.0000	689.0	0.24%	490.6	0.17%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-16	-3.872e+01	0.0000	20857.0	7.38%	19692.9	6.97%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-16	-3.852e+01	0.0000	1544.0	0.55%	1236.7	0.44%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-16	-3.732e+01	0.0000	17038.0	6.03%	16001.1	5.66%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-15	-3.668e+01	0.0000	9663.0	3.42%	8886.3	3.15%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-15	-3.662e+01	0.0000	11563.0	4.09%	10714.2	3.79%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-15	-3.596e+01	0.0000	138.0	0.05%	63.9	0.02%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-15	-3.592e+01	0.0000	29473.0	10.43%	28156.9	9.97%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-15	-3.591e+01	0.0000	1262.0	0.45%	995.4	0.35%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-15	-3.537e+01	0.0000	5420.0	1.92%	4851.0	1.72%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-14	-3.383e+01	0.0000	1011.0	0.36%	781.3	0.28%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-14	-3.325e+01	0.0000	22492.0	7.96%	21377.2	7.57%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-14	-3.321e+01	0.0000	34542.0	12.22%	33184.1	11.75%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-13	-3.174e+01	0.0000	7007.0	2.48%	6394.9	2.26%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-13	-3.133e+01	0.0000	17107.0	6.05%	16160.0	5.72%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-13	-3.126e+01	0.0000	18448.0	6.53%	17466.8	6.18%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-13	-3.125e+01	0.0000	77178.0	27.31%	75361.2	26.68%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-13	-3.107e+01	0.0000	4344.0	1.54%	3869.7	1.37%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-13	-3.014e+01	0.0000	9573.0	3.39%	8875.1	3.14%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-12	-2.984e+01	0.0000	19173.0	6.78%	18197.9	6.44%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-12	-2.968e+01	0.0000	6894.0	2.44%	6307.6	2.23%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-12	-2.901e+01	0.0000	5457.0	1.93%	4942.2	1.75%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-12	-2.883e+01	0.0000	16103.0	5.70%	15222.8	5.39%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-12	-2.865e+01	0.0000	94812.0	33.55%	92963.8	32.91%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-12	-2.857e+01	0.0000	24581.0	8.70%	23508.5	8.32%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-12	-2.845e+01	0.0000	4003.0	1.42%	3568.0	1.26%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-12	-2.841e+01	0.0000	13192.0	4.67%	12399.6	4.39%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-12	-2.819e+01	0.0000	4641.0	1.64%	4174.2	1.48%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-12	-2.767e+01	0.0000	3499.0	1.24%	3099.9	1.10%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-11	-2.744e+01	0.0000	23737.0	8.40%	22704.0	8.04%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-11	-2.617e+01	0.0000	2480.0	0.88%	2155.7	0.76%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-11	-2.609e+01	0.0000	37220.0	13.17%	35985.7	12.74%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-11	-2.587e+01	0.0000	1861.0	0.66%	1583.5	0.56%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-10	-2.518e+01	0.0000	6640.0	2.35%	6112.9	2.16%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-10	-2.461e+01	0.0000	11448.0	4.05%	10763.3	3.81%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-10	-2.460e+01	0.0000	1997.0	0.71%	1716.9	0.61%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-10	-2.355e+01	0.0000	9077.0	3.21%	8481.4	3.00%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-10	-2.330e+01	0.0000	38317.0	13.56%	37140.3	13.15%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-10	-2.325e+01	0.0000	13215.0	4.68%	12502.0	4.43%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-10	-2.304e+01	0.0000	21928.0	7.76%	21022.1	7.44%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-9	-2.236e+01	0.0000	67771.0	23.98%	66319.1	23.48%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-9	-2.222e+01	0.0000	38291.0	13.55%	37144.2	13.15%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-9	-2.136e+01	0.0000	2179.0	0.77%	1906.9	0.68%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-9	-2.129e+01	0.0000	15505.0	5.49%	14770.3	5.23%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-9	-2.104e+01	0.0000	32789.0	11.60%	31750.9	11.24%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-9	-2.102e+01	0.0000	3485.0	1.23%	3140.8	1.11%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-9	-2.092e+01	0.0000	9139.0	3.23%	8578.8	3.04%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-8	-2.045e+01	0.0000	4198.0	1.49%	3824.9	1.35%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-8	-2.034e+01	0.0000	22617.0	8.00%	21758.9	7.70%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-8	-1.985e+01	0.0000	11731.0	4.15%	11114.4	3.93%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-8	-1.974e+01	0.0000	252.0	0.09%	170.7	0.06%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-8	-1.946e+01	0.0000	6626.0	2.34%	6167.5	2.18%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-8	-1.941e+01	0.0000	1759.0	0.62%	1528.0	0.54%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-8	-1.933e+01	0.0000	1514.0	0.54%	1300.4	0.46%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-8	-1.909e+01	0.0000	28496.0	10.08%	27572.8	9.76%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-8	-1.908e+01	0.0000	65424.0	23.15%	64109.5	22.70%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-7	-1.835e+01	0.0000	25264.0	8.94%	24410.0	8.64%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-7	-1.783e+01	0.0000	42425.0	15.01%	41362.1	14.64%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-7	-1.762e+01	0.0000	5622.0	1.99%	5223.0	1.85%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-7	-1.739e+01	0.0000	41260.0	14.60%	40224.8	14.24%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-7	-1.707e+01	0.0000	3869.0	1.37%	3544.5	1.25%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-7	-1.701e+01	0.0000	3654.0	1.29%	3339.3	1.18%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-7	-1.645e+01	0.0000	745.0	0.26%	610.5	0.22%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-7	-1.624e+01	0.0000	51956.0	18.38%	50857.3	18.00%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-6	-1.610e+01	0.0000	21682.0	7.67%	20942.7	7.41%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-6	-1.591e+01	0.0000	125689.0	44.47%	124255.9	43.99%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-6	-1.564e+01	0.0000	15677.0	5.55%	15054.9	5.33%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-6	-1.530e+01	0.0000	4099.0	1.45%	3784.1	1.34%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-6	-1.518e+01	0.0000	82861.0	29.32%	81602.6	28.89%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-6	-1.495e+01	0.0000	28014.0	9.91%	27214.3	9.63%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-6	-1.472e+01	0.0000	13369.0	4.73%	12812.2	4.54%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-6	-1.453e+01	0.0000	2551.0	0.90%	2311.3	0.82%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-6	-1.424e+01	0.0000	9922.0	3.51%	9450.4	3.35%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-6	-1.417e+01	0.0000	58383.0	20.66%	57316.8	20.29%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-6	-1.400e+01	0.0000	9521.0	3.37%	9063.9	3.21%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-6	-1.395e+01	0.0000	140321.0	49.65%	138970.1	49.20%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-6	-1.392e+01	0.0000	11966.0	4.23%	11455.0	4.06%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-6	-1.385e+01	0.0000	54134.0	19.15%	53112.5	18.80%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-5	-1.376e+01	0.0000	2643.0	0.94%	2406.6	0.85%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-5	-1.328e+01	0.0000	54136.0	19.15%	53138.5	18.81%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-5	-1.290e+01	0.0000	7309.0	2.59%	6926.3	2.45%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-5	-1.263e+01	0.0000	9095.0	3.22%	8673.2	3.07%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-5	-1.252e+01	0.0000	9364.0	3.31%	8938.1	3.16%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-5	-1.234e+01	0.0000	94327.0	33.37%	93161.5	32.98%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-5	-1.199e+01	0.0000	6310.0	2.23%	5969.6	2.11%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-5	-1.199e+01	0.0000	39011.0	13.80%	38192.5	13.52%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-5	-1.193e+01	0.0000	9225.0	3.26%	8814.1	3.12%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-5	-1.173e+01	0.0000	18747.0	6.63%	18171.5	6.43%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-5	-1.171e+01	0.0000	18586.0	6.58%	18013.6	6.38%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-4	-1.151e+01	0.0000	24913.0	8.81%	24261.9	8.59%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-4	-1.124e+01	0.0000	1193.0	0.42%	1053.9	0.37%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-4	-1.106e+01	0.0000	1870.0	0.66%	1695.7	0.60%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-4	-1.106e+01	0.0000	1870.0	0.66%	1695.7	0.60%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-4	-1.072e+01	0.0000	2585.0	0.91%	2382.5	0.84%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-4	-1.065e+01	0.0000	1148.0	0.41%	1015.5	0.36%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-4	-1.003e+01	0.0001	1470.0	0.52%	1324.2	0.47%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-4	-1.003e+01	0.0001	30797.0	10.90%	30134.4	10.67%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-4	-9.933e+00	0.0001	15687.0	5.55%	15208.6	5.38%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-4	-9.908e+00	0.0001	941.0	0.33%	826.1	0.29%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-4	-9.674e+00	0.0001	41522.0	14.69%	40780.7	14.44%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-4	-9.672e+00	0.0001	4999.0	1.77%	4732.1	1.68%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-4	-9.562e+00	0.0001	13178.0	4.66%	12748.7	4.51%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-4	-9.442e+00	0.0001	19102.0	6.76%	18591.6	6.58%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-4	-9.387e+00	0.0002	9832.0	3.48%	9464.9	3.35%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-8.940e+00	0.0002	4709.0	1.67%	4462.1	1.58%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-3	-8.890e+00	0.0003	1691.0	0.60%	1545.2	0.55%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-3	-8.824e+00	0.0003	10262.0	3.63%	9900.4	3.50%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-8.788e+00	0.0003	3171.0	1.12%	2971.4	1.05%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-8.788e+00	0.0003	3171.0	1.12%	2971.4	1.05%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-8.707e+00	0.0003	3697.0	1.31%	3482.6	1.23%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-3	-8.678e+00	0.0003	58947.0	20.86%	58142.3	20.58%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-3	-8.507e+00	0.0004	4882.0	1.73%	4638.2	1.64%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-3	-8.501e+00	0.0004	5458.0	1.93%	5200.9	1.84%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-3	-8.478e+00	0.0004	17207.0	6.09%	16752.9	5.93%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-3	-8.199e+00	0.0005	3941.0	1.39%	3727.7	1.32%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-8.198e+00	0.0005	2507.0	0.89%	2337.9	0.83%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-7.858e+00	0.0007	11278.0	3.99%	10925.5	3.87%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-3	-7.471e+00	0.0010	10754.0	3.80%	10420.3	3.69%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-3	-7.402e+00	0.0011	22553.0	7.98%	22077.9	7.82%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-3	-7.359e+00	0.0011	9930.0	3.51%	9612.9	3.40%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-3	-7.167e+00	0.0014	4966.0	1.76%	4745.3	1.68%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-7.109e+00	0.0014	9606.0	3.40%	9300.5	3.29%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-3	-6.925e+00	0.0017	59685.0	21.12%	58981.2	20.88%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-2	-6.908e+00	0.0017	8163.0	2.89%	7886.6	2.79%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-6.845e+00	0.0018	5602.0	1.98%	5374.9	1.90%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-6.671e+00	0.0022	1309.0	0.46%	1202.4	0.43%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-6.558e+00	0.0024	10672.0	3.78%	10366.0	3.67%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-2	-6.365e+00	0.0029	8123.0	2.87%	7861.9	2.78%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-6.336e+00	0.0030	30318.0	10.73%	29823.8	10.56%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-2	-6.313e+00	0.0031	59955.0	21.21%	59291.0	20.99%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-6.286e+00	0.0031	3830.0	1.36%	3652.3	1.29%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-6.247e+00	0.0033	3819.0	1.35%	3642.7	1.29%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-6.171e+00	0.0035	6079.0	2.15%	5857.3	2.07%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-2	-6.072e+00	0.0038	35718.0	12.64%	35199.9	12.46%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-2	-5.758e+00	0.0052	165.0	0.06%	132.1	0.05%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-2	-5.688e+00	0.0056	1353.0	0.48%	1255.2	0.44%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-5.665e+00	0.0057	10236.0	3.62%	9964.2	3.53%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-5.655e+00	0.0057	5829.0	2.06%	5624.2	1.99%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-2	-5.482e+00	0.0068	14047.0	4.97%	13736.2	4.86%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-2	-5.470e+00	0.0069	36988.0	13.09%	36496.1	12.92%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-2	-5.437e+00	0.0071	746.0	0.26%	676.6	0.24%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-2	-5.418e+00	0.0072	1386.0	0.49%	1291.0	0.46%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-5.224e+00	0.0087	19378.0	6.86%	19026.1	6.74%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-5.166e+00	0.0092	42175.0	14.92%	41673.1	14.75%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-5.135e+00	0.0094	38508.0	13.62%	38028.4	13.46%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-5.062e+00	0.0101	16762.0	5.93%	16441.3	5.82%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-5.020e+00	0.0105	58960.0	20.86%	58392.4	20.67%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-2	-5.018e+00	0.0105	24219.0	8.57%	23838.0	8.44%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-4.985e+00	0.0108	7836.0	2.77%	7618.0	2.70%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-2	-4.979e+00	0.0108	27880.0	9.86%	27475.8	9.73%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-2	-4.952e+00	0.0111	15889.0	5.62%	15581.3	5.52%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-2	-4.951e+00	0.0111	5463.0	1.93%	5282.3	1.87%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-4.913e+00	0.0114	26528.0	9.39%	26136.4	9.25%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-2	-4.736e+00	0.0136	334.0	0.12%	293.0	0.10%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-4.656e+00	0.0147	203.0	0.07%	171.3	0.06%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-2	-4.649e+00	0.0147	2114.0	0.75%	2007.9	0.71%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-4.519e+00	0.0167	3479.0	1.23%	3344.6	1.18%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-4.416e+00	0.0185	7766.0	2.75%	7567.9	2.68%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-4.254e+00	0.0216	3852.0	1.36%	3717.0	1.32%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.966e+00	0.0288	5053.0	1.79%	4905.4	1.74%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.922e+00	0.0300	10417.0	3.69%	10206.1	3.61%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.811e+00	0.0333	412.0	0.15%	372.6	0.13%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-3.795e+00	0.0338	25486.0	9.02%	25167.5	8.91%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-3.722e+00	0.0362	102.0	0.04%	84.0	0.03%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.633e+00	0.0394	1142.0	0.40%	1077.4	0.38%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.619e+00	0.0398	3290.0	1.16%	3179.8	1.13%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.538e+00	0.0431	1923.0	0.68%	1840.3	0.65%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.426e+00	0.0480	3274.0	1.16%	3168.9	1.12%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-1	-3.327e+00	0.0528	2431.0	0.86%	2343.0	0.83%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.315e+00	0.0533	12301.0	4.35%	12100.1	4.28%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-3.165e+00	0.0617	6090.0	2.15%	5954.0	2.11%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.025e+00	0.0708	1224.0	0.43%	1167.0	0.41%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.834e+00	0.0854	7883.0	2.79%	7743.0	2.74%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-2.758e+00	0.0918	14204.0	5.03%	14019.0	4.96%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-1	-2.649e+00	0.1021	22479.0	7.95%	22255.1	7.88%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-2.471e+00	0.1215	7319.0	2.59%	7199.4	2.55%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-2.458e+00	0.1226	768.0	0.27%	730.1	0.26%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-1	-2.390e+00	0.1309	12283.0	4.35%	12132.9	4.30%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.161e+00	0.1640	102.0	0.04%	90.0	0.03%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.120e+00	0.1704	26467.0	9.36%	26270.7	9.30%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.091e+00	0.1748	2107.0	0.75%	2053.4	0.73%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.025e+00	0.1862	5491.0	1.94%	5406.8	1.91%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.807e+00	0.2308	2207.0	0.78%	2160.5	0.76%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.786e+00	0.2349	36585.0	12.94%	36392.8	12.88%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.734e+00	0.2466	327.0	0.12%	310.1	0.11%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.696e+00	0.2553	3866.0	1.37%	3808.7	1.35%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.593e+00	0.2822	5637.0	1.99%	5572.4	1.97%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.584e+00	0.2837	18198.0	6.44%	18080.6	6.40%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.558e+00	0.2905	26514.0	9.38%	26374.8	9.34%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.550e+00	0.2918	43342.0	15.34%	43164.3	15.28%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.408e+00	0.3353	9794.0	3.47%	9721.1	3.44%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.365e+00	0.3490	1798.0	0.64%	1769.3	0.63%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.194e+00	0.4130	7336.0	2.60%	7288.0	2.58%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.134e+00	0.4371	150.0	0.05%	144.0	0.05%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.965e-01	0.4998	9165.0	3.24%	9128.1	3.23%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-9.835e-01	0.5048	75260.0	26.63%	75141.3	26.60%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-9.535e-01	0.5186	19010.0	6.73%	18961.0	6.71%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-9.521e-01	0.5186	1198.0	0.42%	1187.5	0.42%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-9.233e-01	0.5312	17686.0	6.26%	17643.0	6.25%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-9.054e-01	0.5392	43782.0	15.49%	43710.2	15.47%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.436e-01	0.5718	74100.0	26.22%	74016.6	26.20%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-8.386e-01	0.5730	1974.0	0.70%	1965.1	0.70%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-8.374e-01	0.5730	6171.0	2.18%	6154.9	2.18%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.845e-01	0.6012	2368.0	0.84%	2361.1	0.84%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.806e-01	0.6017	6139.0	2.17%	6127.8	2.17%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.777e-01	0.6017	18131.0	6.42%	18107.5	6.41%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-7.329e-01	0.6274	37980.0	13.44%	37949.7	13.43%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-7.091e-01	0.6406	73211.0	25.90%	73164.9	25.90%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.565e-01	0.6732	8581.0	3.04%	8580.6	3.04%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-6.182e-01	0.6974	827.0	0.29%	829.2	0.29%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.849e-01	0.7189	668.0	0.24%	671.2	0.24%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.532e-01	0.7399	2770.0	0.98%	2778.1	0.98%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-5.210e-01	0.7619	819.0	0.29%	825.8	0.29%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.017e-01	0.7744	21391.0	7.57%	21416.1	7.58%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.005e-01	0.7744	5245.0	1.86%	5261.5	1.86%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.953e-01	0.7749	6431.0	2.28%	6449.3	2.28%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-4.715e-01	0.7913	35663.0	12.62%	35698.9	12.64%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.069e-01	0.8417	1628.0	0.58%	1644.2	0.58%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.791e-01	0.8629	7772.0	2.75%	7809.0	2.76%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.617e-01	0.8756	1901.0	0.67%	1922.3	0.68%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.572e-01	0.8770	1179.0	0.42%	1196.1	0.42%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.176e-01	0.9099	6384.0	2.26%	6428.3	2.28%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.053e-01	0.9185	7294.0	2.58%	7343.3	2.60%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-2.693e-01	0.9495	12428.0	4.40%	12499.7	4.43%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.616e-01	0.9541	45764.0	16.19%	45882.3	16.24%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.147e-01	0.9972	2189.0	0.77%	2228.6	0.79%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.090e-01	1.0000	12119.0	4.29%	12207.1	4.32%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-2.033e-01	1.0000	9852.0	3.49%	9935.0	3.52%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.032e-01	1.0000	6110.0	2.16%	6176.4	2.19%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.659e-01	1.0000	7870.0	2.78%	7955.2	2.82%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.611e-01	1.0000	22160.0	7.84%	22296.7	7.89%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.537e-01	1.0000	656.0	0.23%	683.4	0.24%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.254e-01	1.0000	258.0	0.09%	277.0	0.10%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.177e-01	1.0000	46610.0	16.49%	46824.2	16.58%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.101e-01	1.0000	41085.0	14.54%	41297.8	14.62%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.020e-01	1.0000	872.0	0.31%	910.1	0.32%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-9.838e-02	1.0000	3154.0	1.12%	3226.2	1.14%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-9.285e-02	1.0000	4677.0	1.65%	4766.9	1.69%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.686e-02	1.0000	1481.0	0.52%	1536.1	0.54%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.328e-02	1.0000	29089.0	10.29%	29310.1	10.38%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-6.573e-02	1.0000	23354.0	8.26%	23564.9	8.34%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-6.259e-02	1.0000	2920.0	1.03%	3002.0	1.06%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-5.781e-02	1.0000	30641.0	10.84%	30886.4	10.93%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-4.874e-02	1.0000	123.0	0.04%	142.7	0.05%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.226e-02	1.0000	19109.0	6.76%	19330.8	6.84%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.431e-02	1.0000	4758.0	1.68%	4881.3	1.73%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.293e-02	1.0000	5663.0	2.00%	5798.1	2.05%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-3.288e-02	1.0000	22210.0	7.86%	22462.8	7.95%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.264e-02	1.0000	2099.0	0.74%	2183.1	0.77%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.071e-02	1.0000	22560.0	7.98%	22818.9	8.08%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.432e-02	1.0000	1216.0	0.43%	1285.3	0.46%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.489e-02	1.0000	28777.0	10.18%	29111.9	10.31%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.391e-02	1.0000	98.0	0.03%	121.1	0.04%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-8.056e-03	1.0000	444.0	0.16%	496.0	0.18%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-7.129e-03	1.0000	678.0	0.24%	743.1	0.26%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-6.710e-03	1.0000	996.0	0.35%	1075.2	0.38%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.970e-03	1.0000	5169.0	1.83%	5357.1	1.90%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.944e-03	1.0000	9672.0	3.42%	9925.2	3.51%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-3.572e-03	1.0000	27105.0	9.59%	27512.8	9.74%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.684e-03	1.0000	157295.0	55.65%	157978.5	55.93%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.508e-03	1.0000	33651.0	11.91%	34144.7	12.09%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-8.680e-04	1.0000	9762.0	3.45%	10063.6	3.56%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-5.660e-04	1.0000	10289.0	3.64%	10610.4	3.76%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-5.030e-04	1.0000	391.0	0.14%	459.1	0.16%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.930e-04	1.0000	6511.0	2.30%	6773.1	2.40%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.410e-04	1.0000	5306.0	1.88%	5546.5	1.96%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.200e-04	1.0000	1971.0	0.70%	2129.4	0.75%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.810e-04	1.0000	8758.0	3.10%	9085.6	3.22%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.000e-05	1.0000	11219.0	3.97%	11605.5	4.11%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-8.400e-05	1.0000	30382.0	10.75%	30987.8	10.97%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.300e-05	1.0000	28425.0	10.06%	29032.6	10.28%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.800e-05	1.0000	2926.0	1.04%	3146.2	1.11%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.700e-05	1.0000	38577.0	13.65%	39295.4	13.91%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.300e-05	1.0000	1302.0	0.46%	1453.6	0.51%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.300e-05	1.0000	26771.0	9.47%	27394.7	9.70%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.900e-05	1.0000	14836.0	5.25%	15320.0	5.42%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.000e-06	1.0000	1591.0	0.56%	1784.1	0.63%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	82648.0	29.24%	83794.8	29.67%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-0.000e+00	1.0000	43489.0	15.39%	44425.0	15.73%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	4176.0	1.48%	4504.3	1.59%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	6672.0	2.36%	7090.9	2.51%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-0.000e+00	1.0000	9373.0	3.32%	9926.4	3.51%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-0.000e+00	1.0000	6713.0	2.38%	7214.9	2.55%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-0.000e+00	1.0000	31061.0	10.99%	32097.7	11.36%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	1996.0	0.71%	2309.3	0.82%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-0.000e+00	1.0000	12627.0	4.47%	13456.6	4.76%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	20176.0	7.14%	21223.9	7.51%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-0.000e+00	1.0000	22189.0	7.85%	23293.9	8.25%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	18453.0	6.53%	19505.1	6.91%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	22365.0	7.91%	23535.8	8.33%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	68097.0	24.09%	72009.4	25.49%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	92741.0	32.81%	95362.7	33.76%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	32005.0	11.32%	33877.3	11.99%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	18295.0	6.47%	20214.2	7.16%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	24452.0	8.65%	27192.4	9.63%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	55126.0	19.50%	58881.9	20.85%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	17307.0	6.12%	19271.1	6.82%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	2493.0	0.88%	3188.4	1.13%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	27646.0	9.78%	29489.1	10.44%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	79121.0	27.99%	82034.4	29.04%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	51207.0	18.12%	54803.5	19.40%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	62423.0	22.09%	65080.0	23.04%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	7895.0	2.79%	9365.3	3.32%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	78696.0	27.84%	80799.3	28.60%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	17548.0	6.21%	18759.9	6.64%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	4252.0	1.50%	4989.5	1.77%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	2687.0	0.95%	3545.4	1.26%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	8243.0	2.92%	9141.9	3.24%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	27795.0	9.83%	29536.7	10.46%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	534.0	0.19%	766.3	0.27%