Homer de novo Motif Results (homer_results/LNCaP_FOXA1_DMSO_rep1/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 249866
Total background sequences = 249647
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T G A C T C G T A 1e-3170-7.301e+0320.93%12.32%54.7bp (56.8bp)FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer(0.992)
More Information | Similar Motifs Found		motif file (matrix)
2 T A G C G T A C C T G A T A G C G A T C C G T A A C T G C T G A C A T G C T A G C A T G G T A C 1e-558-1.285e+031.42%0.53%54.5bp (56.3bp)BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer(0.924)
More Information | Similar Motifs Found		motif file (matrix)
3 G A T C G A C T A C T G A T C G A T G C G C T A C T A G A C G T 1e-473-1.089e+0322.85%19.10%56.9bp (58.7bp)NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.954)
More Information | Similar Motifs Found		motif file (matrix)
4 T A G C A G C T G T A C C T G A A C G T C G T A C G T A C G T A 1e-363-8.379e+0219.35%16.26%56.4bp (57.2bp)Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer(0.922)
More Information | Similar Motifs Found		motif file (matrix)
5 G T A C A G C T A G C T A G C T A G T C G T A C G A T C C T A G 1e-220-5.081e+0253.89%50.72%56.0bp (56.6bp)E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer(0.769)
More Information | Similar Motifs Found		motif file (matrix)
6 A C T G T G A C G A T C C T A G C G A T A G C T A G C T T G C A 1e-205-4.741e+0218.67%16.36%56.2bp (57.6bp)NFIX/MA0671.1/Jaspar(0.673)
More Information | Similar Motifs Found		motif file (matrix)
7 A C T G C G T A A G C T C G T A C G T A A G C T A C G T A T C G A C G T A G T C C G A T C G T A 1e-185-4.280e+020.20%0.04%46.1bp (52.7bp)HESX1/MA0894.1/Jaspar(0.681)
More Information | Similar Motifs Found		motif file (matrix)
8 A C T G A C G T A C G T A C T G C G T A A C G T A C G T A C G T 1e-184-4.246e+029.68%8.06%56.5bp (56.6bp)PH0037.1_Hdx/Jaspar(0.803)
More Information | Similar Motifs Found		motif file (matrix)
9 A G T C G A T C G C A T A C T G C A G T A C T G T C A G T G A C 1e-178-4.114e+0234.16%31.49%56.5bp (57.2bp)MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer(0.767)
More Information | Similar Motifs Found		motif file (matrix)
10 C G T A A C G T A C T G A T C G T A G C A G T C A C G T A C T G A C G T C G T A A G T C A G T C 1e-143-3.314e+020.06%0.00%40.0bp (69.1bp)PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer(0.670)
More Information | Similar Motifs Found		motif file (matrix)
11 C G T A G T C A A C T G A C G T A G C T A C T G A C T G A C G T A G T C A G C T C T A G A C T G 1e-132-3.051e+020.05%0.00%60.6bp (55.3bp)Smad4/MA1153.1/Jaspar(0.661)
More Information | Similar Motifs Found		motif file (matrix)
12 C G T A A C G T A G T C G T C A G T A C A C T G A C G T A C G T A C G T A G T C C T G A A C G T 1e-131-3.029e+020.12%0.02%50.8bp (49.2bp)SIX2/MA1119.1/Jaspar(0.771)
More Information | Similar Motifs Found		motif file (matrix)
13 A C G T A C G T C G T A A C T G A G T C A G T C A T C G T C G A G T A C C A G T A C G T G C A T 1e-131-3.028e+020.10%0.01%52.8bp (47.0bp)RHOXF1/MA0719.1/Jaspar(0.629)
More Information | Similar Motifs Found		motif file (matrix)
14 T A G C A C G T C A G T G T C A C T A G A C T G A G T C C T A G A G T C A C G T G T A C A C G T 1e-131-3.018e+020.05%0.00%56.5bp (27.6bp)POL006.1_BREu/Jaspar(0.637)
More Information | Similar Motifs Found		motif file (matrix)
15 C T G A A C T G C T G A A C T G C T G A A C T G G A T C C A T G 1e-118-2.734e+0215.32%13.70%56.2bp (56.5bp)ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer(0.709)
More Information | Similar Motifs Found		motif file (matrix)
16 A G T C C T G A A G T C C G T A A G C T A C T G A C G T G T C A A T C G A C T G C G T A A C T G 1e-112-2.582e+020.07%0.01%46.0bp (53.9bp)MXI1/MA1108.2/Jaspar(0.622)
More Information | Similar Motifs Found		motif file (matrix)
17 C G T A A C G T A C T G G T C A A C G T A G T C C T A G C T A G A C T G A C T G C G T A G T C A 1e-108-2.493e+020.08%0.01%45.7bp (46.8bp)RELB/MA1117.1/Jaspar(0.649)
More Information | Similar Motifs Found		motif file (matrix)
18 A G T C A G T C A G T C A G T C A T C G G A T C A T C G T A C G 1e-106-2.453e+0218.13%16.48%56.0bp (55.5bp)KLF15/MA1513.1/Jaspar(0.687)
More Information | Similar Motifs Found		motif file (matrix)
19 T A G C A C G T T A G C A T G C A C G T T A C G A C G T T G C A A G C T T G C A A T C G T C G A 1e-100-2.325e+020.04%0.00%44.2bp (39.8bp)ZSCAN29/MA1602.1/Jaspar(0.651)
More Information | Similar Motifs Found		motif file (matrix)
20 T C G A G A T C C T G A G T C A C T A G A G T C G A T C T A C G 1e-99-2.284e+0211.84%10.52%56.7bp (58.5bp)POL010.1_DCE_S_III/Jaspar(0.593)
More Information | Similar Motifs Found		motif file (matrix)
21 A T G C T C G A A C G T T C G A G A T C A C G T T A G C A T G C C A G T T C G A A C G T A G C T 1e-97-2.238e+020.03%0.00%53.2bp (19.3bp)Dmbx1/MA0883.1/Jaspar(0.605)
More Information | Similar Motifs Found		motif file (matrix)
22 A C G T T G A C T A G C A C G T G T C A A T C G A T C G A G C T T G A C A T G C A C G T T G A C 1e-94-2.165e+020.03%0.00%53.5bp (34.1bp)HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer(0.620)
More Information | Similar Motifs Found		motif file (matrix)
23 C G T A A C G T A C G T G T A C T A G C C G T A A C G T A G C T A G T C T A C G C T G A A C G T 1e-91-2.103e+020.03%0.00%55.9bp (0.0bp)TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer(0.633)
More Information | Similar Motifs Found		motif file (matrix)
24 A C T G C T A G G T C A A C G T A G T C A T C G A G C T G T A C C T G A C G A T 1e-91-2.100e+020.12%0.03%51.6bp (51.9bp)PB0108.1_Atf1_2/Jaspar(0.677)
More Information | Similar Motifs Found		motif file (matrix)
25 A C T G A G T C A G C T A T G C A T G C G T C A A T G C C T A G 1e-83-1.915e+027.26%6.30%56.4bp (58.1bp)ZNF354C/MA0130.1/Jaspar(0.793)
More Information | Similar Motifs Found		motif file (matrix)
26 T C G A A C G T A C T G C G T A T A G C A C G T A G T C C T G A 1e-80-1.854e+024.94%4.16%56.2bp (56.9bp)FOS/MA0476.1/Jaspar(0.965)
More Information | Similar Motifs Found		motif file (matrix)
27 A T C G A G C T A G T C T A G C A C G T C G A T G T C A C T A G A C T G A G T C 1e-79-1.840e+020.32%0.15%55.0bp (55.8bp)HOXA4/MA1496.1/Jaspar(0.656)
More Information | Similar Motifs Found		motif file (matrix)
28 A G T C C G T A C G T A A C G T A C G T A G T C A C G T A C G T C G T A A C T G C G T A A G T C 1e-79-1.821e+020.03%0.00%46.2bp (46.8bp)STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer(0.647)
More Information | Similar Motifs Found		motif file (matrix)
29 A C T G A C T G A G T C A C G T C G T A A C T G A G T C A T G C C T G A G T A C 1e-77-1.776e+020.08%0.01%42.5bp (45.8bp)SMAD5/MA1557.1/Jaspar(0.700)
More Information | Similar Motifs Found		motif file (matrix)
30 G T C A A C G T C G A T G T C A A C T G A C T G A T C G C T G A A G C T C A T G 1e-76-1.772e+020.35%0.17%54.0bp (56.1bp)PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer(0.653)
More Information | Similar Motifs Found		motif file (matrix)
31 A G T C A C G T A G C T A C T G C G T A A C T G A C G T A G C T A C T G C G T A 1e-72-1.678e+020.19%0.07%52.2bp (60.5bp)NKX2-2/MA1645.1/Jaspar(0.731)
More Information | Similar Motifs Found		motif file (matrix)
32 C T G A A G T C G A T C C A T G C T A G C G A T A C G T A G C T 1e-70-1.615e+024.25%3.57%56.8bp (57.2bp)GRHL1/MA0647.1/Jaspar(0.899)
More Information | Similar Motifs Found		motif file (matrix)
33 C A T G A T C G G A C T T A C G A G T C A C G T G A C T A C G T G T A C G T A C 1e-67-1.544e+027.96%7.05%55.5bp (56.4bp)MF0003.1_REL_class/Jaspar(0.715)
More Information | Similar Motifs Found		motif file (matrix)
34 A T C G G T C A A T G C A T G C A T C G A C T G C T G A G T C A G T C A A T G C 1e-56-1.306e+020.40%0.23%55.2bp (56.3bp)ETV2/MA0762.1/Jaspar(0.737)
More Information | Similar Motifs Found		motif file (matrix)
35 C G T A C G T A C G T A C G T A A C T G C G T A C G T A A C T G C G T A A C G T 1e-50-1.167e+020.43%0.26%54.1bp (54.2bp)Mecom/MA0029.1/Jaspar(0.650)
More Information | Similar Motifs Found		motif file (matrix)
36 A T G C A C T G A T G C T A C G T A G C T C A G G T A C A C T G A T G C C A T G 1e-40-9.266e+010.98%0.74%55.7bp (52.7bp)PB0095.1_Zfp161_1/Jaspar(0.780)
More Information | Similar Motifs Found		motif file (matrix)