Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 249854)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 249652)	% of Background Sequences with Motif
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-2907	-6.696e+03	0.0000	49696.0	19.89%	29458.9	11.80%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-2764	-6.366e+03	0.0000	26964.0	10.79%	12786.1	5.12%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2532	-5.831e+03	0.0000	78917.0	31.59%	55469.0	22.22%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2498	-5.754e+03	0.0000	70001.0	28.02%	47797.1	19.15%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2426	-5.587e+03	0.0000	66816.0	26.75%	45335.8	18.16%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2017	-4.645e+03	0.0000	43768.0	17.52%	27539.8	11.03%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1724	-3.970e+03	0.0000	59349.0	23.76%	41868.4	16.77%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1628	-3.751e+03	0.0000	34236.0	13.70%	21190.8	8.49%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1509	-3.475e+03	0.0000	44658.0	17.88%	30226.8	12.11%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1474	-3.396e+03	0.0000	27316.0	10.93%	16232.4	6.50%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1429	-3.290e+03	0.0000	56771.0	22.73%	41032.6	16.44%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1309	-3.016e+03	0.0000	62107.0	24.86%	46391.6	18.59%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-853	-1.966e+03	0.0000	46670.0	18.68%	35288.0	14.14%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-803	-1.851e+03	0.0000	66305.0	26.54%	53466.6	21.42%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-771	-1.777e+03	0.0000	3096.0	1.24%	847.8	0.34%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-549	-1.265e+03	0.0000	3066.0	1.23%	1058.7	0.42%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-395	-9.100e+02	0.0000	39149.0	15.67%	31811.3	12.75%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-354	-8.155e+02	0.0000	53853.0	21.56%	45853.5	18.37%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-327	-7.539e+02	0.0000	7662.0	3.07%	4777.7	1.91%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-237	-5.471e+02	0.0000	7291.0	2.92%	4847.1	1.94%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-228	-5.259e+02	0.0000	82424.0	32.99%	74894.9	30.01%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-205	-4.728e+02	0.0000	105029.0	42.04%	97449.0	39.04%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-189	-4.364e+02	0.0000	109410.0	43.80%	102072.3	40.90%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-187	-4.320e+02	0.0000	119228.0	47.73%	111847.3	44.81%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-183	-4.222e+02	0.0000	2802.0	1.12%	1539.9	0.62%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-169	-3.906e+02	0.0000	48088.0	19.25%	42734.7	17.12%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-156	-3.614e+02	0.0000	33274.0	13.32%	28885.0	11.57%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-125	-2.894e+02	0.0000	47147.0	18.87%	42558.7	17.05%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-113	-2.622e+02	0.0000	36800.0	14.73%	32868.1	13.17%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-109	-2.517e+02	0.0000	41594.0	16.65%	37528.8	15.04%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-89	-2.060e+02	0.0000	3382.0	1.35%	2346.9	0.94%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-84	-1.940e+02	0.0000	88165.0	35.29%	83473.9	33.44%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-74	-1.720e+02	0.0000	11188.0	4.48%	9385.1	3.76%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-74	-1.710e+02	0.0000	14908.0	5.97%	12829.7	5.14%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-74	-1.707e+02	0.0000	17066.0	6.83%	14845.7	5.95%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-73	-1.700e+02	0.0000	6695.0	2.68%	5322.3	2.13%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-72	-1.669e+02	0.0000	13787.0	5.52%	11811.5	4.73%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-71	-1.656e+02	0.0000	15813.0	6.33%	13705.1	5.49%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-70	-1.628e+02	0.0000	10411.0	4.17%	8718.4	3.49%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-69	-1.609e+02	0.0000	80929.0	32.40%	76753.2	30.75%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-69	-1.591e+02	0.0000	17222.0	6.89%	15066.6	6.04%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-68	-1.587e+02	0.0000	4595.0	1.84%	3507.5	1.41%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-64	-1.483e+02	0.0000	105594.0	42.27%	101323.9	40.60%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-63	-1.462e+02	0.0000	25174.0	10.08%	22690.3	9.09%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-63	-1.453e+02	0.0000	59185.0	23.69%	55610.9	22.28%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-63	-1.451e+02	0.0000	31052.0	12.43%	28326.0	11.35%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-62	-1.436e+02	0.0000	36557.0	14.63%	33639.8	13.48%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-62	-1.433e+02	0.0000	19582.0	7.84%	17400.9	6.97%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-62	-1.428e+02	0.0000	18277.0	7.32%	16171.4	6.48%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-61	-1.426e+02	0.0000	34645.0	13.87%	31805.1	12.74%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-59	-1.379e+02	0.0000	34733.0	13.90%	31937.9	12.80%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-59	-1.371e+02	0.0000	88560.0	35.45%	84607.1	33.90%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-58	-1.339e+02	0.0000	20850.0	8.35%	18675.3	7.48%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-57	-1.331e+02	0.0000	17563.0	7.03%	15567.7	6.24%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-57	-1.331e+02	0.0000	19546.0	7.82%	17444.7	6.99%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-55	-1.282e+02	0.0000	22376.0	8.96%	20174.6	8.08%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-50	-1.169e+02	0.0000	15136.0	6.06%	13395.1	5.37%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-48	-1.126e+02	0.0000	13781.0	5.52%	12150.1	4.87%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-48	-1.116e+02	0.0000	11913.0	4.77%	10403.7	4.17%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-48	-1.111e+02	0.0000	16518.0	6.61%	14746.1	5.91%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-47	-1.101e+02	0.0000	28634.0	11.46%	26342.7	10.55%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-47	-1.095e+02	0.0000	32395.0	12.97%	29978.0	12.01%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-46	-1.074e+02	0.0000	13852.0	5.55%	12254.1	4.91%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-46	-1.061e+02	0.0000	9938.0	3.98%	8594.8	3.44%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-45	-1.054e+02	0.0000	39973.0	16.00%	37372.8	14.97%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-45	-1.042e+02	0.0000	15666.0	6.27%	13993.0	5.61%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-44	-1.018e+02	0.0000	5938.0	2.38%	4928.5	1.97%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-42	-9.767e+01	0.0000	18060.0	7.23%	16323.2	6.54%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-41	-9.632e+01	0.0000	59530.0	23.83%	56612.0	22.68%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-41	-9.609e+01	0.0000	18210.0	7.29%	16480.9	6.60%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-41	-9.492e+01	0.0000	18046.0	7.22%	16334.9	6.54%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-39	-9.194e+01	0.0000	15409.0	6.17%	13849.2	5.55%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-39	-9.062e+01	0.0000	7039.0	2.82%	5996.5	2.40%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-38	-8.849e+01	0.0000	15027.0	6.02%	13515.1	5.41%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-38	-8.774e+01	0.0000	6819.0	2.73%	5809.3	2.33%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-37	-8.724e+01	0.0000	18834.0	7.54%	17158.1	6.87%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-37	-8.662e+01	0.0000	6232.0	2.49%	5274.2	2.11%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-37	-8.583e+01	0.0000	3517.0	1.41%	2811.5	1.13%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-36	-8.435e+01	0.0000	23710.0	9.49%	21871.6	8.76%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-35	-8.264e+01	0.0000	505.0	0.20%	272.1	0.11%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-35	-8.095e+01	0.0000	7547.0	3.02%	6524.1	2.61%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-35	-8.072e+01	0.0000	13183.0	5.28%	11829.8	4.74%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-34	-8.004e+01	0.0000	84623.0	33.87%	81640.6	32.71%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-34	-7.971e+01	0.0000	31250.0	12.51%	29220.0	11.71%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-34	-7.862e+01	0.0000	12394.0	4.96%	11098.3	4.45%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-33	-7.808e+01	0.0000	11589.0	4.64%	10340.5	4.14%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-33	-7.749e+01	0.0000	19016.0	7.61%	17429.3	6.98%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-33	-7.714e+01	0.0000	6255.0	2.50%	5348.6	2.14%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-31	-7.359e+01	0.0000	15242.0	6.10%	13853.9	5.55%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-31	-7.358e+01	0.0000	18599.0	7.45%	17069.2	6.84%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-31	-7.357e+01	0.0000	17905.0	7.17%	16403.6	6.57%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-31	-7.186e+01	0.0000	36865.0	14.76%	34792.9	13.94%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-30	-7.013e+01	0.0000	46756.0	18.72%	44492.3	17.83%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-30	-6.923e+01	0.0000	45089.0	18.05%	42874.0	17.18%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-30	-6.916e+01	0.0000	2487.0	1.00%	1958.3	0.78%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-29	-6.709e+01	0.0000	9697.0	3.88%	8638.2	3.46%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-28	-6.607e+01	0.0000	8617.0	3.45%	7627.2	3.06%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-27	-6.411e+01	0.0000	43404.0	17.37%	41306.2	16.55%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-27	-6.313e+01	0.0000	78237.0	31.32%	75651.0	30.31%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-27	-6.231e+01	0.0000	4560.0	1.83%	3867.5	1.55%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-25	-5.977e+01	0.0000	8750.0	3.50%	7801.3	3.13%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-25	-5.943e+01	0.0000	19895.0	7.96%	18476.5	7.40%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-25	-5.845e+01	0.0000	76912.0	30.79%	74437.8	29.82%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-25	-5.758e+01	0.0000	21347.0	8.55%	19903.4	7.97%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-24	-5.749e+01	0.0000	30733.0	12.30%	29025.6	11.63%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-23	-5.514e+01	0.0000	22462.0	8.99%	21015.6	8.42%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-23	-5.493e+01	0.0000	29610.0	11.85%	27970.0	11.21%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-23	-5.476e+01	0.0000	4163.0	1.67%	3543.9	1.42%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-23	-5.474e+01	0.0000	9997.0	4.00%	9026.9	3.62%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-23	-5.402e+01	0.0000	52498.0	21.02%	50422.0	20.20%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-23	-5.368e+01	0.0000	24691.0	9.88%	23199.3	9.29%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-23	-5.328e+01	0.0000	18279.0	7.32%	16990.9	6.81%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-23	-5.321e+01	0.0000	26208.0	10.49%	24681.2	9.89%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-22	-5.259e+01	0.0000	16039.0	6.42%	14837.2	5.94%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-22	-5.236e+01	0.0000	15005.0	6.01%	13844.7	5.55%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-21	-5.062e+01	0.0000	24876.0	9.96%	23423.7	9.38%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-21	-5.038e+01	0.0000	4924.0	1.97%	4275.9	1.71%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-21	-4.924e+01	0.0000	22192.0	8.88%	20834.6	8.35%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-21	-4.876e+01	0.0000	7004.0	2.80%	6239.1	2.50%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-20	-4.745e+01	0.0000	15139.0	6.06%	14030.9	5.62%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-20	-4.737e+01	0.0000	10391.0	4.16%	9471.9	3.79%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-20	-4.716e+01	0.0000	14268.0	5.71%	13194.1	5.29%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-19	-4.416e+01	0.0000	10235.0	4.10%	9354.5	3.75%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-18	-4.359e+01	0.0000	9589.0	3.84%	8742.9	3.50%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-18	-4.324e+01	0.0000	4178.0	1.67%	3626.2	1.45%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-18	-4.306e+01	0.0000	32092.0	12.85%	30590.8	12.26%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-18	-4.200e+01	0.0000	6209.0	2.49%	5542.7	2.22%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-17	-4.002e+01	0.0000	9221.0	3.69%	8426.0	3.38%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-16	-3.903e+01	0.0000	123.0	0.05%	51.7	0.02%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-16	-3.835e+01	0.0000	22585.0	9.04%	21381.4	8.57%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-16	-3.689e+01	0.0000	1673.0	0.67%	1358.6	0.54%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-15	-3.641e+01	0.0000	3669.0	1.47%	3196.8	1.28%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-15	-3.637e+01	0.0000	13519.0	5.41%	12604.2	5.05%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-15	-3.634e+01	0.0000	3812.0	1.53%	3330.6	1.33%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-15	-3.570e+01	0.0000	1223.0	0.49%	961.3	0.39%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-15	-3.563e+01	0.0000	19577.0	7.84%	18494.8	7.41%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-15	-3.554e+01	0.0000	920.0	0.37%	696.4	0.28%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-14	-3.402e+01	0.0000	9888.0	3.96%	9131.6	3.66%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-14	-3.260e+01	0.0000	84415.0	33.79%	82529.6	33.07%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-13	-3.173e+01	0.0000	16866.0	6.75%	15917.8	6.38%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-13	-3.165e+01	0.0000	6892.0	2.76%	6284.0	2.52%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-13	-3.157e+01	0.0000	30638.0	12.26%	29386.6	11.77%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-13	-3.132e+01	0.0000	19966.0	7.99%	18944.4	7.59%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-13	-3.102e+01	0.0000	33975.0	13.60%	32676.3	13.09%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-13	-3.067e+01	0.0000	16303.0	6.53%	15386.3	6.16%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-13	-3.066e+01	0.0000	1784.0	0.71%	1487.9	0.60%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-13	-3.045e+01	0.0000	29198.0	11.69%	27997.0	11.22%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-12	-2.941e+01	0.0000	11839.0	4.74%	11072.8	4.44%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-12	-2.918e+01	0.0000	5867.0	2.35%	5330.3	2.14%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-12	-2.917e+01	0.0000	6197.0	2.48%	5645.1	2.26%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-12	-2.861e+01	0.0000	16682.0	6.68%	15788.7	6.33%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-12	-2.829e+01	0.0000	260.0	0.10%	161.5	0.06%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-12	-2.828e+01	0.0000	225.0	0.09%	134.4	0.05%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-12	-2.801e+01	0.0000	1614.0	0.65%	1345.2	0.54%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-11	-2.717e+01	0.0000	936.0	0.37%	738.1	0.30%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-11	-2.698e+01	0.0000	11680.0	4.68%	10952.8	4.39%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-11	-2.625e+01	0.0000	83054.0	33.25%	81377.7	32.60%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-11	-2.621e+01	0.0000	10343.0	4.14%	9668.6	3.87%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-11	-2.597e+01	0.0000	1324.0	0.53%	1091.9	0.44%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-11	-2.594e+01	0.0000	1130.0	0.45%	916.4	0.37%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-11	-2.563e+01	0.0000	20098.0	8.05%	19176.9	7.68%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-11	-2.549e+01	0.0000	18035.0	7.22%	17162.4	6.88%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-11	-2.536e+01	0.0000	1583.0	0.63%	1330.5	0.53%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-11	-2.534e+01	0.0000	1047.0	0.42%	844.9	0.34%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-10	-2.456e+01	0.0000	68416.0	27.39%	66895.0	26.80%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-10	-2.443e+01	0.0000	17189.0	6.88%	16355.9	6.55%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-10	-2.441e+01	0.0000	903.0	0.36%	719.5	0.29%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-10	-2.430e+01	0.0000	9240.0	3.70%	8627.5	3.46%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-10	-2.315e+01	0.0000	4584.0	1.83%	4165.8	1.67%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-10	-2.303e+01	0.0000	1405.0	0.56%	1179.4	0.47%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-9	-2.286e+01	0.0000	5722.0	2.29%	5256.6	2.11%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-9	-2.233e+01	0.0000	51784.0	20.73%	50480.9	20.23%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-9	-2.208e+01	0.0000	8761.0	3.51%	8194.0	3.28%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-9	-2.199e+01	0.0000	34384.0	13.76%	33296.2	13.34%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-9	-2.183e+01	0.0000	11711.0	4.69%	11060.3	4.43%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-9	-2.171e+01	0.0000	25884.0	10.36%	24934.4	9.99%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-9	-2.146e+01	0.0000	58112.0	23.26%	56778.0	22.75%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-8	-2.071e+01	0.0000	3829.0	1.53%	3469.4	1.39%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-8	-1.996e+01	0.0000	32863.0	13.16%	31851.9	12.76%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-8	-1.954e+01	0.0000	8641.0	3.46%	8114.0	3.25%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-8	-1.912e+01	0.0000	668.0	0.27%	530.3	0.21%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-8	-1.908e+01	0.0000	46700.0	18.69%	45551.5	18.25%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-8	-1.906e+01	0.0000	124405.0	49.80%	122867.9	49.23%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-8	-1.865e+01	0.0000	47918.0	19.18%	46771.8	18.74%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-8	-1.865e+01	0.0000	8056.0	3.22%	7560.9	3.03%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-8	-1.862e+01	0.0000	1969.0	0.79%	1728.9	0.69%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-7	-1.825e+01	0.0000	2343.0	0.94%	2082.3	0.83%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-7	-1.817e+01	0.0000	18876.0	7.56%	18133.9	7.27%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-7	-1.809e+01	0.0000	6356.0	2.54%	5923.1	2.37%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-7	-1.791e+01	0.0000	10668.0	4.27%	10110.9	4.05%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-7	-1.777e+01	0.0000	3094.0	1.24%	2797.6	1.12%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-7	-1.749e+01	0.0000	2203.0	0.88%	1956.4	0.78%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-7	-1.723e+01	0.0000	193.0	0.08%	127.0	0.05%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-7	-1.706e+01	0.0000	8011.0	3.21%	7540.9	3.02%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-7	-1.702e+01	0.0000	8133.0	3.26%	7659.0	3.07%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-7	-1.696e+01	0.0000	25541.0	10.22%	24717.0	9.90%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-7	-1.643e+01	0.0000	60065.0	24.04%	58895.1	23.60%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-7	-1.638e+01	0.0000	3116.0	1.25%	2831.6	1.13%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-6	-1.609e+01	0.0000	22677.0	9.08%	21919.7	8.78%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-6	-1.573e+01	0.0000	73720.0	29.51%	72491.0	29.04%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-6	-1.572e+01	0.0000	4922.0	1.97%	4571.0	1.83%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-6	-1.569e+01	0.0000	13818.0	5.53%	13229.9	5.30%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-6	-1.557e+01	0.0000	8421.0	3.37%	7962.7	3.19%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-6	-1.550e+01	0.0000	8540.0	3.42%	8079.3	3.24%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-6	-1.549e+01	0.0000	47900.0	19.17%	46864.9	18.78%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-6	-1.541e+01	0.0000	3170.0	1.27%	2892.4	1.16%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-6	-1.510e+01	0.0000	5862.0	2.35%	5486.9	2.20%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-6	-1.482e+01	0.0000	16893.0	6.76%	16264.5	6.52%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-6	-1.456e+01	0.0000	592.0	0.24%	480.3	0.19%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-6	-1.455e+01	0.0000	9206.0	3.69%	8744.4	3.50%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-6	-1.447e+01	0.0000	4283.0	1.71%	3970.7	1.59%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-6	-1.417e+01	0.0000	53594.0	21.45%	52562.3	21.06%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-6	-1.407e+01	0.0000	3283.0	1.31%	3014.4	1.21%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-6	-1.385e+01	0.0000	34021.0	13.62%	33181.5	13.29%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-5	-1.344e+01	0.0000	21819.0	8.73%	21146.9	8.47%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-5	-1.319e+01	0.0000	7333.0	2.94%	6943.4	2.78%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-5	-1.317e+01	0.0000	1323.0	0.53%	1161.9	0.47%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-5	-1.289e+01	0.0000	3803.0	1.52%	3528.0	1.41%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-5	-1.273e+01	0.0000	8233.0	3.30%	7828.9	3.14%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-5	-1.214e+01	0.0000	9624.0	3.85%	9199.0	3.69%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-5	-1.203e+01	0.0000	2108.0	0.84%	1912.1	0.77%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-4	-1.137e+01	0.0000	3415.0	1.37%	3172.6	1.27%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-4	-1.120e+01	0.0000	6619.0	2.65%	6282.8	2.52%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-4	-1.112e+01	0.0000	3615.0	1.45%	3369.0	1.35%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-4	-1.106e+01	0.0000	1176.0	0.47%	1038.1	0.42%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-1.104e+01	0.0000	24773.0	9.92%	24135.4	9.67%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-4	-1.100e+01	0.0000	13759.0	5.51%	13279.9	5.32%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-4	-1.078e+01	0.0000	14104.0	5.65%	13624.4	5.46%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-4	-1.073e+01	0.0000	15105.0	6.05%	14610.6	5.85%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-4	-1.063e+01	0.0000	37486.0	15.01%	36732.0	14.72%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-4	-1.062e+01	0.0000	31403.0	12.57%	30707.6	12.30%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-4	-1.061e+01	0.0000	5378.0	2.15%	5084.5	2.04%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-4	-1.042e+01	0.0001	8120.0	3.25%	7763.0	3.11%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-4	-1.042e+01	0.0001	4918.0	1.97%	4640.7	1.86%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-4	-1.039e+01	0.0001	36674.0	14.68%	35937.1	14.40%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-4	-1.031e+01	0.0001	36807.0	14.73%	36073.0	14.45%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-4	-1.031e+01	0.0001	37514.0	15.02%	36773.5	14.73%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-4	-1.015e+01	0.0001	21966.0	8.79%	21392.9	8.57%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-4	-1.006e+01	0.0001	24494.0	9.81%	23893.7	9.57%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-4	-9.845e+00	0.0001	2243.0	0.90%	2063.9	0.83%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-4	-9.767e+00	0.0001	17137.0	6.86%	16639.2	6.67%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-4	-9.262e+00	0.0002	3346.0	1.34%	3133.7	1.26%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-3	-9.186e+00	0.0002	376.0	0.15%	308.3	0.12%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-3	-9.078e+00	0.0002	3426.0	1.37%	3213.2	1.29%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-3	-8.961e+00	0.0002	2265.0	0.91%	2094.6	0.84%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-3	-8.761e+00	0.0003	618.0	0.25%	532.8	0.21%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-3	-8.579e+00	0.0003	1219.0	0.49%	1098.5	0.44%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-3	-8.537e+00	0.0003	4778.0	1.91%	4535.3	1.82%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-3	-8.522e+00	0.0004	34531.0	13.82%	33893.4	13.58%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-3	-8.434e+00	0.0004	52707.0	21.10%	51946.5	20.81%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-8.289e+00	0.0004	9884.0	3.96%	9540.6	3.82%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-8.287e+00	0.0004	11077.0	4.43%	10713.6	4.29%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-3	-8.283e+00	0.0004	984.0	0.39%	879.0	0.35%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-3	-8.150e+00	0.0005	13618.0	5.45%	13219.8	5.30%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-3	-8.109e+00	0.0005	3467.0	1.39%	3267.0	1.31%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-7.965e+00	0.0006	2820.0	1.13%	2642.9	1.06%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-7.965e+00	0.0006	2820.0	1.13%	2642.9	1.06%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-7.277e+00	0.0012	12610.0	5.05%	12252.5	4.91%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-3	-7.164e+00	0.0013	16621.0	6.65%	16215.0	6.50%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-3	-7.031e+00	0.0015	20201.0	8.09%	19760.3	7.92%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-6.981e+00	0.0016	4049.0	1.62%	3852.5	1.54%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-3	-6.922e+00	0.0017	8985.0	3.60%	8692.4	3.48%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-6.552e+00	0.0024	14686.0	5.88%	14325.0	5.74%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-2	-6.549e+00	0.0024	4390.0	1.76%	4193.1	1.68%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-6.464e+00	0.0026	4331.0	1.73%	4137.3	1.66%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-6.382e+00	0.0028	11535.0	4.62%	11220.7	4.50%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-2	-6.158e+00	0.0035	284.0	0.11%	238.4	0.10%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-6.049e+00	0.0039	2884.0	1.15%	2733.7	1.10%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-2	-5.872e+00	0.0046	22756.0	9.11%	22340.3	8.95%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-2	-5.600e+00	0.0060	7189.0	2.88%	6961.8	2.79%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.590e+00	0.0061	818.0	0.33%	743.6	0.30%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-5.553e+00	0.0063	1100.0	0.44%	1013.4	0.41%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-5.521e+00	0.0065	8729.0	3.49%	8480.2	3.40%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-2	-5.504e+00	0.0065	27598.0	11.05%	27161.4	10.88%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-5.453e+00	0.0069	111130.0	44.49%	110380.1	44.22%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-2	-5.431e+00	0.0070	1633.0	0.65%	1528.9	0.61%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-2	-5.074e+00	0.0099	1185.0	0.47%	1100.7	0.44%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-5.019e+00	0.0105	5167.0	2.07%	4988.4	2.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-4.981e+00	0.0108	1028.0	0.41%	950.9	0.38%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-4.891e+00	0.0118	1080.0	0.43%	1001.2	0.40%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-4.847e+00	0.0123	38622.0	15.46%	38153.2	15.29%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-1	-4.530e+00	0.0168	52510.0	21.02%	51997.5	20.83%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-4.494e+00	0.0174	23286.0	9.32%	22935.5	9.19%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-1	-4.486e+00	0.0174	19797.0	7.92%	19474.0	7.80%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-4.440e+00	0.0182	2112.0	0.85%	2008.1	0.80%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-4.434e+00	0.0183	656.0	0.26%	599.7	0.24%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-4.402e+00	0.0188	26785.0	10.72%	26415.3	10.58%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-4.391e+00	0.0189	3321.0	1.33%	3191.6	1.28%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-1	-4.338e+00	0.0199	631.0	0.25%	576.7	0.23%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-4.333e+00	0.0199	1648.0	0.66%	1558.9	0.62%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-4.333e+00	0.0199	1648.0	0.66%	1558.9	0.62%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-4.201e+00	0.0226	6934.0	2.78%	6751.4	2.70%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-4.113e+00	0.0246	53270.0	21.32%	52787.6	21.15%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.855e+00	0.0317	1829.0	0.73%	1742.7	0.70%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-3.841e+00	0.0320	8342.0	3.34%	8154.0	3.27%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.791e+00	0.0335	6813.0	2.73%	6645.6	2.66%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.661e+00	0.0381	16073.0	6.43%	15821.9	6.34%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-3.568e+00	0.0417	8748.0	3.50%	8566.9	3.43%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-3.509e+00	0.0441	4771.0	1.91%	4639.8	1.86%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-3.453e+00	0.0464	6451.0	2.58%	6300.0	2.52%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.424e+00	0.0476	2820.0	1.13%	2722.0	1.09%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.230e+00	0.0576	5676.0	2.27%	5541.8	2.22%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.139e+00	0.0629	83.0	0.03%	68.3	0.03%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.111e+00	0.0645	7030.0	2.81%	6884.1	2.76%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.073e+00	0.0668	1473.0	0.59%	1408.3	0.56%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-1	-2.997e+00	0.0718	33034.0	13.22%	32727.9	13.11%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.991e+00	0.0720	9305.0	3.72%	9142.4	3.66%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.925e+00	0.0767	5041.0	2.02%	4924.0	1.97%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-2.895e+00	0.0787	8232.0	3.30%	8083.4	3.24%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.823e+00	0.0843	1907.0	0.76%	1838.7	0.74%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-2.808e+00	0.0853	764.0	0.31%	721.4	0.29%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-2.663e+00	0.0983	9606.0	3.85%	9456.7	3.79%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-2.631e+00	0.1012	274.0	0.11%	250.8	0.10%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.545e+00	0.1099	2977.0	1.19%	2898.4	1.16%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-1	-2.467e+00	0.1186	41042.0	16.43%	40752.0	16.33%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.236e+00	0.1488	23540.0	9.42%	23338.7	9.35%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-2.165e+00	0.1592	10891.0	4.36%	10759.1	4.31%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.962e+00	0.1945	32306.0	12.93%	32097.2	12.86%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.893e+00	0.2077	5425.0	2.17%	5345.6	2.14%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.828e+00	0.2211	144.0	0.06%	132.3	0.05%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.818e+00	0.2226	4707.0	1.88%	4636.1	1.86%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.804e+00	0.2249	1021.0	0.41%	989.6	0.40%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.740e+00	0.2391	1799.0	0.72%	1758.3	0.70%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.590e+00	0.2770	236.0	0.09%	224.0	0.09%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.566e+00	0.2828	7173.0	2.87%	7099.0	2.84%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.542e+00	0.2886	12629.0	5.06%	12531.4	5.02%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.489e+00	0.3036	31605.0	12.65%	31452.8	12.60%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.416e+00	0.3255	758.0	0.30%	738.4	0.30%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.204e+00	0.4013	15496.0	6.20%	15419.7	6.18%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.095e+00	0.4459	1646.0	0.66%	1627.4	0.65%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.088e+00	0.4479	18699.0	7.49%	18627.6	7.46%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.080e+00	0.4502	5670.0	2.27%	5634.8	2.26%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.060e+00	0.4579	1057.0	0.42%	1043.5	0.42%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.059e+00	0.4579	5214.0	2.09%	5181.4	2.08%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.053e+00	0.4581	7507.0	3.01%	7467.2	2.99%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.013e+00	0.4754	26814.0	10.73%	26736.2	10.71%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-9.548e-01	0.5025	81.0	0.03%	78.7	0.03%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-9.522e-01	0.5025	16094.0	6.44%	16044.9	6.43%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-9.488e-01	0.5026	3438.0	1.38%	3419.0	1.37%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-8.874e-01	0.5328	133.0	0.05%	130.1	0.05%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.973e-01	0.5813	23429.0	9.38%	23390.7	9.37%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-7.563e-01	0.6039	8701.0	3.48%	8686.7	3.48%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.261e-01	0.6206	66843.0	26.76%	66775.0	26.75%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.806e-01	0.6476	1438.0	0.58%	1437.2	0.58%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.734e-01	0.7188	1952.0	0.78%	1957.9	0.78%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.726e-01	0.7188	564.0	0.23%	567.3	0.23%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-5.363e-01	0.7416	1705.0	0.68%	1712.4	0.69%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.978e-01	0.7686	2442.0	0.98%	2453.8	0.98%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.789e-01	0.7810	5363.0	2.15%	5380.7	2.16%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-4.612e-01	0.7927	33494.0	13.41%	33521.6	13.43%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-4.231e-01	0.8211	36597.0	14.65%	36635.9	14.68%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-3.865e-01	0.8493	8859.0	3.55%	8894.7	3.56%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-3.355e-01	0.8912	16764.0	6.71%	16820.2	6.74%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.179e-01	0.9044	5718.0	2.29%	5758.7	2.31%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.146e-01	0.9049	64854.0	25.96%	64931.3	26.02%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.031e-01	0.9128	6544.0	2.62%	6589.6	2.64%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-2.867e-01	0.9253	23671.0	9.48%	23749.6	9.52%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-2.796e-01	0.9293	2830.0	1.13%	2864.2	1.15%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.581e-01	0.9468	4387.0	1.76%	4432.8	1.78%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.942e-01	1.0000	2051.0	0.82%	2091.3	0.84%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.842e-01	1.0000	716.0	0.29%	741.0	0.30%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.757e-01	1.0000	1118.0	0.45%	1150.1	0.46%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-1.547e-01	1.0000	10868.0	4.35%	10967.6	4.39%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.504e-01	1.0000	2539.0	1.02%	2591.5	1.04%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.244e-01	1.0000	5425.0	2.17%	5507.5	2.21%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.076e-01	1.0000	19772.0	7.91%	19926.4	7.98%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.728e-02	1.0000	1261.0	0.50%	1307.8	0.52%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-9.680e-02	1.0000	4568.0	1.83%	4653.4	1.86%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-8.514e-02	1.0000	19537.0	7.82%	19707.7	7.90%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-7.430e-02	1.0000	88.0	0.04%	102.0	0.04%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-6.000e-02	1.0000	1412.0	0.57%	1470.9	0.59%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.008e-02	1.0000	65512.0	26.22%	65841.1	26.38%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-3.884e-02	1.0000	339.0	0.14%	372.3	0.15%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.192e-02	1.0000	40552.0	16.23%	40889.3	16.38%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.090e-02	1.0000	4112.0	1.65%	4239.4	1.70%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-2.001e-02	1.0000	115.0	0.05%	138.1	0.06%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.857e-02	1.0000	16749.0	6.70%	16996.9	6.81%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.049e-02	1.0000	4635.0	1.86%	4788.2	1.92%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-8.315e-03	1.0000	1906.0	0.76%	2010.1	0.81%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.707e-03	1.0000	38339.0	15.35%	38762.5	15.53%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.963e-03	1.0000	1748.0	0.70%	1859.5	0.75%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-3.330e-03	1.0000	7740.0	3.10%	7970.4	3.19%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.471e-03	1.0000	1118.0	0.45%	1213.1	0.49%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-2.169e-03	1.0000	25389.0	10.16%	25799.9	10.34%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.522e-03	1.0000	6906.0	2.76%	7145.2	2.86%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-1.459e-03	1.0000	20489.0	8.20%	20881.8	8.37%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.407e-03	1.0000	4744.0	1.90%	4946.5	1.98%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-9.540e-04	1.0000	10466.0	4.19%	10770.0	4.32%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-8.870e-04	1.0000	9865.0	3.95%	10163.2	4.07%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-7.500e-04	1.0000	13136.0	5.26%	13481.6	5.40%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-4.930e-04	1.0000	9017.0	3.61%	9319.2	3.73%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.920e-04	1.0000	1581.0	0.63%	1716.1	0.69%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.860e-04	1.0000	5945.0	2.38%	6199.4	2.48%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-3.270e-04	1.0000	19560.0	7.83%	20003.1	8.01%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.950e-04	1.0000	34311.0	13.73%	34874.3	13.97%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.550e-04	1.0000	25145.0	10.07%	25648.7	10.28%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.530e-04	1.0000	4075.0	1.63%	4296.0	1.72%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.770e-04	1.0000	4951.0	1.98%	5199.3	2.08%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.630e-04	1.0000	2549.0	1.02%	2731.7	1.09%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-9.800e-05	1.0000	23734.0	9.50%	24262.3	9.72%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.600e-05	1.0000	364.0	0.15%	443.3	0.18%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.500e-05	1.0000	25628.0	10.26%	26212.2	10.50%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-3.200e-05	1.0000	8185.0	3.28%	8539.0	3.42%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.200e-05	1.0000	846.0	0.34%	969.1	0.39%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.500e-05	1.0000	599.0	0.24%	706.0	0.28%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-4.000e-06	1.0000	138931.0	55.61%	139910.3	56.06%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.000e-06	1.0000	38290.0	15.33%	39126.9	15.68%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	73044.0	29.24%	74252.9	29.75%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	3697.0	1.48%	4045.3	1.62%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	8547.0	3.42%	9081.0	3.64%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	1763.0	0.71%	2025.2	0.81%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-0.000e+00	1.0000	29524.0	11.82%	30538.4	12.24%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	5907.0	2.36%	6409.7	2.57%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	26768.0	10.72%	27774.8	11.13%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	19865.0	7.95%	20806.7	8.34%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	464.0	0.19%	638.3	0.26%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-0.000e+00	1.0000	27379.0	10.96%	28592.5	11.46%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	16209.0	6.49%	17193.8	6.89%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	69259.0	27.72%	71049.9	28.47%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	59664.0	23.88%	63865.9	25.59%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	82167.0	32.89%	85089.5	34.09%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	28277.0	11.32%	30489.3	12.22%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	16145.0	6.46%	17818.4	7.14%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	17753.0	7.11%	18853.0	7.55%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	20916.0	8.37%	23764.5	9.52%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	48425.0	19.38%	52639.0	21.09%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	14899.0	5.96%	16901.1	6.77%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	2165.0	0.87%	2730.9	1.09%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	19411.0	7.77%	20531.2	8.23%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	24277.0	9.72%	26134.2	10.47%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	69618.0	27.87%	72875.2	29.20%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	44610.0	17.86%	48526.3	19.44%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	54842.0	21.95%	57861.5	23.18%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	0.000e+00	1.0000	10855.0	4.35%	11760.0	4.71%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	6832.0	2.73%	8306.5	3.33%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	15362.0	6.15%	16769.2	6.72%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	3699.0	1.48%	4408.4	1.77%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	2239.0	0.90%	3154.1	1.26%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	7193.0	2.88%	7908.3	3.17%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	24392.0	9.76%	26200.6	10.50%