Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 255030)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 254896)	% of Background Sequences with Motif
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3092	-7.122e+03	0.0000	51261.0	20.10%	30128.7	11.82%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-2932	-6.753e+03	0.0000	27903.0	10.94%	13097.1	5.14%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2616	-6.026e+03	0.0000	80719.0	31.65%	56629.4	22.23%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2567	-5.913e+03	0.0000	71457.0	28.02%	48723.6	19.12%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2420	-5.574e+03	0.0000	68164.0	26.73%	46467.1	18.24%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2154	-4.960e+03	0.0000	45154.0	17.71%	28173.9	11.06%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1833	-4.222e+03	0.0000	61200.0	24.00%	42940.1	16.85%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1770	-4.076e+03	0.0000	35552.0	13.94%	21751.8	8.54%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1594	-3.672e+03	0.0000	28272.0	11.09%	16594.3	6.51%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1592	-3.667e+03	0.0000	46072.0	18.07%	31046.4	12.18%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1528	-3.520e+03	0.0000	58345.0	22.88%	41883.3	16.44%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1346	-3.101e+03	0.0000	63488.0	24.90%	47382.9	18.60%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-924	-2.130e+03	0.0000	68323.0	26.79%	54405.2	21.35%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-897	-2.067e+03	0.0000	47838.0	18.76%	36038.2	14.14%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-738	-1.700e+03	0.0000	3041.0	1.19%	849.4	0.33%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-465	-1.072e+03	0.0000	40206.0	15.77%	32173.2	12.63%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-463	-1.067e+03	0.0000	2934.0	1.15%	1092.4	0.43%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-317	-7.299e+02	0.0000	54416.0	21.34%	46781.8	18.36%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-307	-7.077e+02	0.0000	7765.0	3.04%	4935.4	1.94%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-237	-5.459e+02	0.0000	83959.0	32.92%	76216.0	29.91%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-214	-4.939e+02	0.0000	111449.0	43.70%	103571.3	40.65%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-204	-4.703e+02	0.0000	7387.0	2.90%	5083.4	2.00%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-201	-4.651e+02	0.0000	106938.0	41.93%	99345.8	38.99%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-192	-4.434e+02	0.0000	2790.0	1.09%	1505.9	0.59%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-191	-4.414e+02	0.0000	121505.0	47.65%	113970.3	44.73%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-177	-4.096e+02	0.0000	33799.0	13.25%	29099.5	11.42%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-159	-3.678e+02	0.0000	48959.0	19.20%	43710.7	17.16%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-128	-2.958e+02	0.0000	37581.0	14.74%	33367.1	13.10%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-126	-2.923e+02	0.0000	47726.0	18.72%	43082.2	16.91%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-111	-2.578e+02	0.0000	42131.0	16.52%	37988.5	14.91%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-78	-1.813e+02	0.0000	82289.0	32.27%	77818.0	30.54%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-77	-1.779e+02	0.0000	35355.0	13.86%	32156.3	12.62%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-77	-1.774e+02	0.0000	90391.0	35.45%	85852.8	33.69%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-75	-1.746e+02	0.0000	10635.0	4.17%	8865.3	3.48%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-74	-1.724e+02	0.0000	37265.0	14.61%	34040.4	13.36%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-74	-1.713e+02	0.0000	3392.0	1.33%	2437.1	0.96%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-74	-1.709e+02	0.0000	11421.0	4.48%	9604.6	3.77%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-73	-1.695e+02	0.0000	107984.0	42.34%	103372.5	40.57%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-72	-1.666e+02	0.0000	15130.0	5.93%	13061.3	5.13%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-68	-1.585e+02	0.0000	60229.0	23.62%	56463.9	22.16%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-66	-1.536e+02	0.0000	13926.0	5.46%	12018.6	4.72%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-64	-1.495e+02	0.0000	90416.0	35.46%	86247.4	33.85%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-64	-1.495e+02	0.0000	16047.0	6.29%	14026.8	5.51%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-64	-1.480e+02	0.0000	17365.0	6.81%	15274.9	5.99%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-63	-1.453e+02	0.0000	6731.0	2.64%	5452.0	2.14%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-62	-1.450e+02	0.0000	17534.0	6.88%	15454.1	6.07%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-62	-1.447e+02	0.0000	22724.0	8.91%	20368.7	7.99%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-60	-1.389e+02	0.0000	31514.0	12.36%	28825.3	11.31%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-60	-1.385e+02	0.0000	18625.0	7.30%	16530.6	6.49%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-58	-1.352e+02	0.0000	35431.0	13.89%	32634.6	12.81%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-57	-1.324e+02	0.0000	25534.0	10.01%	23151.8	9.09%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-54	-1.264e+02	0.0000	17867.0	7.01%	15904.4	6.24%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-54	-1.253e+02	0.0000	33035.0	12.95%	30424.6	11.94%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-51	-1.183e+02	0.0000	19866.0	7.79%	17865.7	7.01%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-49	-1.138e+02	0.0000	16776.0	6.58%	14968.6	5.87%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-49	-1.138e+02	0.0000	4626.0	1.81%	3692.6	1.45%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-49	-1.137e+02	0.0000	29209.0	11.45%	26856.5	10.54%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-48	-1.126e+02	0.0000	40812.0	16.00%	38096.9	14.95%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-48	-1.107e+02	0.0000	15975.0	6.26%	14234.2	5.59%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-47	-1.100e+02	0.0000	12709.0	4.98%	11160.4	4.38%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-47	-1.089e+02	0.0000	20001.0	7.84%	18074.2	7.09%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-46	-1.069e+02	0.0000	13613.0	5.34%	12032.2	4.72%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-44	-1.027e+02	0.0000	10140.0	3.98%	8803.7	3.46%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-44	-1.027e+02	0.0000	18537.0	7.27%	16733.6	6.57%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-43	-1.008e+02	0.0000	14045.0	5.51%	12485.2	4.90%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-43	-9.976e+01	0.0000	15334.0	6.01%	13713.3	5.38%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-41	-9.595e+01	0.0000	6906.0	2.71%	5844.8	2.29%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-41	-9.452e+01	0.0000	14227.0	5.58%	12706.5	4.99%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-40	-9.427e+01	0.0000	24409.0	9.57%	22437.6	8.81%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-40	-9.326e+01	0.0000	21013.0	8.24%	19186.6	7.53%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-39	-9.109e+01	0.0000	18581.0	7.29%	16879.7	6.62%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-38	-8.819e+01	0.0000	10391.0	4.07%	9135.7	3.59%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-38	-8.806e+01	0.0000	19169.0	7.52%	17470.0	6.86%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-38	-8.758e+01	0.0000	79970.0	31.36%	76887.9	30.18%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-37	-8.594e+01	0.0000	6328.0	2.48%	5366.4	2.11%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-36	-8.516e+01	0.0000	15779.0	6.19%	14259.9	5.60%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-36	-8.486e+01	0.0000	60536.0	23.74%	57774.3	22.67%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-35	-8.114e+01	0.0000	46532.0	18.25%	44096.6	17.31%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-34	-7.948e+01	0.0000	18577.0	7.28%	16987.9	6.67%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-34	-7.925e+01	0.0000	18174.0	7.13%	16603.6	6.52%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-34	-7.886e+01	0.0000	86344.0	33.86%	83354.8	32.71%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-34	-7.878e+01	0.0000	7038.0	2.76%	6064.0	2.38%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-33	-7.826e+01	0.0000	12081.0	4.74%	10804.4	4.24%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-33	-7.737e+01	0.0000	3619.0	1.42%	2937.7	1.15%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-33	-7.721e+01	0.0000	37654.0	14.77%	35482.5	13.93%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-32	-7.583e+01	0.0000	6049.0	2.37%	5165.4	2.03%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-32	-7.567e+01	0.0000	6288.0	2.47%	5387.4	2.11%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-31	-7.274e+01	0.0000	18882.0	7.40%	17349.4	6.81%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-31	-7.237e+01	0.0000	18751.0	7.35%	17227.8	6.76%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-30	-7.086e+01	0.0000	15694.0	6.15%	14311.9	5.62%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-30	-7.081e+01	0.0000	10017.0	3.93%	8911.1	3.50%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-30	-7.051e+01	0.0000	31753.0	12.45%	29830.0	11.71%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-29	-6.892e+01	0.0000	47627.0	18.68%	45362.2	17.80%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-29	-6.882e+01	0.0000	44513.0	17.46%	42312.5	16.61%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-29	-6.881e+01	0.0000	31882.0	12.50%	29978.5	11.77%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-29	-6.809e+01	0.0000	15467.0	6.07%	14121.5	5.54%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-29	-6.775e+01	0.0000	30588.0	11.99%	28734.0	11.28%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-28	-6.533e+01	0.0000	8974.0	3.52%	7969.4	3.13%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-27	-6.406e+01	0.0000	11967.0	4.69%	10817.2	4.25%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-27	-6.321e+01	0.0000	10716.0	4.20%	9635.8	3.78%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-27	-6.305e+01	0.0000	27043.0	10.60%	25353.0	9.95%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-27	-6.262e+01	0.0000	4218.0	1.65%	3551.6	1.39%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-26	-6.200e+01	0.0000	53580.0	21.01%	51330.0	20.15%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-26	-6.102e+01	0.0000	7210.0	2.83%	6342.0	2.49%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-26	-6.092e+01	0.0000	22590.0	8.86%	21063.3	8.27%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-24	-5.711e+01	0.0000	19324.0	7.58%	17952.3	7.05%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-24	-5.643e+01	0.0000	2560.0	1.00%	2073.8	0.81%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-24	-5.622e+01	0.0000	13981.0	5.48%	12818.3	5.03%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-24	-5.565e+01	0.0000	21923.0	8.60%	20485.2	8.04%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-23	-5.401e+01	0.0000	23011.0	9.02%	21562.9	8.46%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-23	-5.374e+01	0.0000	4251.0	1.67%	3630.4	1.42%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-23	-5.359e+01	0.0000	6283.0	2.46%	5524.2	2.17%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-22	-5.101e+01	0.0000	7693.0	3.02%	6872.9	2.70%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-21	-5.034e+01	0.0000	78467.0	30.77%	76151.1	29.89%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-21	-5.002e+01	0.0000	10503.0	4.12%	9552.3	3.75%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-21	-4.918e+01	0.0000	4672.0	1.83%	4048.9	1.59%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-21	-4.909e+01	0.0000	1292.0	0.51%	977.7	0.38%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-20	-4.734e+01	0.0000	8859.0	3.47%	8010.7	3.14%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-20	-4.618e+01	0.0000	9341.0	3.66%	8480.3	3.33%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-19	-4.571e+01	0.0000	1855.0	0.73%	1485.6	0.58%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-19	-4.547e+01	0.0000	3897.0	1.53%	3351.3	1.32%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-19	-4.496e+01	0.0000	18525.0	7.26%	17335.8	6.80%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-19	-4.494e+01	0.0000	20029.0	7.85%	18794.3	7.38%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-19	-4.388e+01	0.0000	9611.0	3.77%	8760.9	3.44%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-18	-4.277e+01	0.0000	16260.0	6.38%	15171.6	5.95%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-18	-4.241e+01	0.0000	1706.0	0.67%	1365.4	0.54%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-17	-4.138e+01	0.0000	6321.0	2.48%	5653.8	2.22%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-17	-4.106e+01	0.0000	25182.0	9.87%	23869.2	9.37%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-17	-4.099e+01	0.0000	25267.0	9.91%	23953.3	9.40%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-17	-3.927e+01	0.0000	10048.0	3.94%	9227.0	3.62%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-16	-3.816e+01	0.0000	32691.0	12.82%	31267.4	12.27%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-16	-3.782e+01	0.0000	471.0	0.18%	312.1	0.12%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-16	-3.776e+01	0.0000	15573.0	6.11%	14573.8	5.72%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-16	-3.712e+01	0.0000	3230.0	1.27%	2783.7	1.09%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-15	-3.588e+01	0.0000	2448.0	0.96%	2068.5	0.81%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-15	-3.556e+01	0.0000	17267.0	6.77%	16248.1	6.38%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-15	-3.473e+01	0.0000	33837.0	13.27%	32460.3	12.74%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-15	-3.468e+01	0.0000	1460.0	0.57%	1176.8	0.46%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-14	-3.449e+01	0.0000	8675.0	3.40%	7961.8	3.12%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-14	-3.426e+01	0.0000	1088.0	0.43%	847.9	0.33%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-14	-3.331e+01	0.0000	23089.0	9.05%	21958.6	8.62%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-14	-3.295e+01	0.0000	35010.0	13.73%	33650.5	13.21%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-14	-3.231e+01	0.0000	15194.0	5.96%	14283.8	5.61%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-13	-3.163e+01	0.0000	86050.0	33.74%	84176.9	33.04%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-13	-3.139e+01	0.0000	5891.0	2.31%	5332.7	2.09%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-13	-3.135e+01	0.0000	9578.0	3.76%	8864.1	3.48%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-13	-3.041e+01	0.0000	4969.0	1.95%	4465.9	1.75%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-12	-2.961e+01	0.0000	1520.0	0.60%	1252.1	0.49%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-12	-2.927e+01	0.0000	957.0	0.38%	749.5	0.29%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-12	-2.882e+01	0.0000	20290.0	7.96%	19304.3	7.58%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-12	-2.801e+01	0.0000	20322.0	7.97%	19350.9	7.59%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-11	-2.745e+01	0.0000	11912.0	4.67%	11170.7	4.38%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-11	-2.661e+01	0.0000	6013.0	2.36%	5495.4	2.16%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-11	-2.628e+01	0.0000	31161.0	12.22%	30015.5	11.78%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-11	-2.608e+01	0.0000	8323.0	3.26%	7719.5	3.03%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-11	-2.602e+01	0.0000	3731.0	1.46%	3330.1	1.31%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-10	-2.505e+01	0.0000	8888.0	3.49%	8277.7	3.25%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-10	-2.471e+01	0.0000	127.0	0.05%	66.4	0.03%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-10	-2.467e+01	0.0000	17513.0	6.87%	16667.8	6.54%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-10	-2.440e+01	0.0000	950.0	0.37%	761.3	0.30%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-10	-2.392e+01	0.0000	930.0	0.36%	745.0	0.29%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-10	-2.355e+01	0.0000	26454.0	10.37%	25451.2	9.99%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-10	-2.318e+01	0.0000	1162.0	0.46%	957.3	0.38%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-10	-2.309e+01	0.0000	10816.0	4.24%	10171.7	3.99%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-9	-2.199e+01	0.0000	1386.0	0.54%	1167.6	0.46%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-9	-2.142e+01	0.0000	5975.0	2.34%	5515.4	2.16%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-9	-2.105e+01	0.0000	1576.0	0.62%	1347.4	0.53%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-8	-2.059e+01	0.0000	11912.0	4.67%	11276.3	4.43%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-8	-2.034e+01	0.0000	14509.0	5.69%	13814.0	5.42%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-8	-2.034e+01	0.0000	127268.0	49.91%	125662.4	49.32%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-8	-2.028e+01	0.0000	6950.0	2.73%	6468.8	2.54%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-8	-1.999e+01	0.0000	3200.0	1.25%	2878.6	1.13%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-8	-1.974e+01	0.0000	38141.0	14.96%	37066.9	14.55%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-8	-1.926e+01	0.0000	34893.0	13.68%	33873.9	13.29%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-8	-1.910e+01	0.0000	59295.0	23.25%	58029.2	22.77%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-8	-1.872e+01	0.0000	1219.0	0.48%	1031.3	0.40%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-7	-1.841e+01	0.0000	75219.0	29.50%	73868.9	28.99%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-7	-1.813e+01	0.0000	3192.0	1.25%	2887.7	1.13%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-7	-1.783e+01	0.0000	47536.0	18.64%	46419.6	18.22%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-7	-1.770e+01	0.0000	1114.0	0.44%	940.2	0.37%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-7	-1.765e+01	0.0000	52888.0	20.74%	51728.8	20.30%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-7	-1.745e+01	0.0000	16585.0	6.50%	15902.6	6.24%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-7	-1.738e+01	0.0000	6581.0	2.58%	6150.7	2.41%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-7	-1.722e+01	0.0000	4385.0	1.72%	4036.3	1.58%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-7	-1.705e+01	0.0000	2039.0	0.80%	1805.2	0.71%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-7	-1.702e+01	0.0000	3934.0	1.54%	3606.8	1.42%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-7	-1.671e+01	0.0000	17274.0	6.77%	16594.2	6.51%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-7	-1.647e+01	0.0000	8155.0	3.20%	7689.8	3.02%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-7	-1.642e+01	0.0000	5043.0	1.98%	4678.1	1.84%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-7	-1.639e+01	0.0000	15585.0	6.11%	14945.0	5.87%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-7	-1.629e+01	0.0000	19173.0	7.52%	18468.8	7.25%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-6	-1.612e+01	0.0000	8716.0	3.42%	8240.9	3.23%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-6	-1.600e+01	0.0000	38405.0	15.06%	37444.1	14.70%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-6	-1.597e+01	0.0000	14107.0	5.53%	13506.5	5.30%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-6	-1.596e+01	0.0000	2241.0	0.88%	2004.1	0.79%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-6	-1.577e+01	0.0000	5500.0	2.16%	5127.6	2.01%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-6	-1.568e+01	0.0000	28402.0	11.14%	27572.2	10.82%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-6	-1.563e+01	0.0000	3862.0	1.51%	3552.5	1.39%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-6	-1.558e+01	0.0000	69649.0	27.31%	68447.0	26.86%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-6	-1.528e+01	0.0000	37753.0	14.80%	36823.5	14.45%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-6	-1.524e+01	0.0000	8221.0	3.22%	7773.9	3.05%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-6	-1.518e+01	0.0000	8819.0	3.46%	8356.3	3.28%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-6	-1.513e+01	0.0000	2295.0	0.90%	2062.9	0.81%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-6	-1.513e+01	0.0000	48980.0	19.21%	47947.0	18.82%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-6	-1.500e+01	0.0000	685.0	0.27%	562.3	0.22%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-6	-1.491e+01	0.0000	25511.0	10.00%	24743.4	9.71%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-6	-1.486e+01	0.0000	49201.0	19.29%	48176.4	18.91%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-6	-1.462e+01	0.0000	1062.0	0.42%	909.5	0.36%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-6	-1.442e+01	0.0000	649.0	0.25%	532.2	0.21%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-6	-1.436e+01	0.0000	33620.0	13.18%	32767.2	12.86%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-6	-1.435e+01	0.0000	16899.0	6.63%	16281.4	6.39%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-6	-1.418e+01	0.0000	54533.0	21.38%	53492.0	20.99%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-6	-1.410e+01	0.0000	20418.0	8.01%	19748.5	7.75%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-6	-1.408e+01	0.0000	12084.0	4.74%	11565.7	4.54%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-6	-1.407e+01	0.0000	2891.0	1.13%	2639.7	1.04%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-6	-1.407e+01	0.0000	2891.0	1.13%	2639.7	1.04%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-6	-1.387e+01	0.0000	29530.0	11.58%	28741.7	11.28%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-5	-1.297e+01	0.0000	11338.0	4.45%	10858.9	4.26%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-5	-1.288e+01	0.0000	238.0	0.09%	174.5	0.07%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-5	-1.266e+01	0.0000	1584.0	0.62%	1410.2	0.55%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-5	-1.266e+01	0.0000	25827.0	10.13%	25123.4	9.86%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-5	-1.264e+01	0.0000	61233.0	24.01%	60212.6	23.63%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-5	-1.259e+01	0.0000	17607.0	6.90%	17022.1	6.68%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-5	-1.256e+01	0.0000	84732.0	33.23%	83594.1	32.81%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-5	-1.252e+01	0.0000	2872.0	1.13%	2637.2	1.04%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-5	-1.233e+01	0.0000	3477.0	1.36%	3220.6	1.26%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-5	-1.233e+01	0.0000	4113.0	1.61%	3833.7	1.50%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-5	-1.192e+01	0.0000	3161.0	1.24%	2921.3	1.15%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-5	-1.188e+01	0.0000	8614.0	3.38%	8216.8	3.22%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-5	-1.186e+01	0.0000	10226.0	4.01%	9793.8	3.84%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-5	-1.183e+01	0.0000	4650.0	1.82%	4359.7	1.71%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-5	-1.170e+01	0.0000	22293.0	8.74%	21665.3	8.50%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-5	-1.168e+01	0.0000	9833.0	3.86%	9412.8	3.69%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-5	-1.165e+01	0.0000	23029.0	9.03%	22393.7	8.79%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-5	-1.161e+01	0.0000	2108.0	0.83%	1916.8	0.75%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-5	-1.161e+01	0.0000	14035.0	5.50%	13535.7	5.31%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-5	-1.159e+01	0.0000	34677.0	13.60%	33912.0	13.31%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-5	-1.159e+01	0.0000	287.0	0.11%	220.0	0.09%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-4	-1.139e+01	0.0000	8294.0	3.25%	7913.2	3.11%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-4	-1.131e+01	0.0000	25243.0	9.90%	24590.1	9.65%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-4	-1.087e+01	0.0000	9221.0	3.62%	8830.2	3.47%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-4	-1.071e+01	0.0000	113615.0	44.55%	112495.8	44.15%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-4	-9.996e+00	0.0001	582.0	0.23%	492.8	0.19%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-4	-9.726e+00	0.0001	5000.0	1.96%	4731.2	1.86%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-3	-9.142e+00	0.0002	155.0	0.06%	114.0	0.04%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-3	-8.859e+00	0.0003	10380.0	4.07%	10013.8	3.93%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-8.595e+00	0.0003	203.0	0.08%	156.2	0.06%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-3	-8.530e+00	0.0004	35324.0	13.85%	34679.9	13.61%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-3	-8.479e+00	0.0004	3450.0	1.35%	3245.7	1.27%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-3	-8.414e+00	0.0004	7386.0	2.90%	7086.6	2.78%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-3	-8.365e+00	0.0004	185.0	0.07%	141.1	0.06%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-8.305e+00	0.0004	12841.0	5.04%	12449.9	4.89%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-3	-8.221e+00	0.0005	27257.0	10.69%	26697.4	10.48%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-3	-8.156e+00	0.0005	2988.0	1.17%	2802.5	1.10%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-8.076e+00	0.0005	9283.0	3.64%	8955.0	3.51%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.007e+00	0.0006	1683.0	0.66%	1546.3	0.61%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.007e+00	0.0006	1683.0	0.66%	1546.3	0.61%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-3	-7.781e+00	0.0007	54386.0	21.33%	53651.8	21.06%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-3	-7.564e+00	0.0009	22023.0	8.64%	21542.7	8.45%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-3	-7.545e+00	0.0009	3678.0	1.44%	3481.1	1.37%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-3	-7.374e+00	0.0011	37591.0	14.74%	36984.1	14.52%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-6.988e+00	0.0016	7218.0	2.83%	6954.1	2.73%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-6.643e+00	0.0022	4445.0	1.74%	4245.5	1.67%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-2	-6.497e+00	0.0025	11209.0	4.40%	10895.2	4.28%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-2	-5.987e+00	0.0042	37689.0	14.78%	37156.8	14.58%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-2	-5.739e+00	0.0053	13894.0	5.45%	13572.7	5.33%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.533e+00	0.0065	7765.0	3.04%	7530.8	2.96%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-5.289e+00	0.0083	14943.0	5.86%	14627.2	5.74%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-5.059e+00	0.0104	5173.0	2.03%	4993.2	1.96%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-2	-5.053e+00	0.0104	1701.0	0.67%	1599.7	0.63%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-4.878e+00	0.0124	24036.0	9.43%	23659.0	9.29%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-4.862e+00	0.0125	8955.0	3.51%	8725.0	3.42%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-2	-4.860e+00	0.0125	53492.0	20.98%	52950.1	20.78%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-4.855e+00	0.0125	149.0	0.06%	121.7	0.05%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-4.805e+00	0.0131	4847.0	1.90%	4679.9	1.84%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-2	-4.764e+00	0.0136	678.0	0.27%	617.8	0.24%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-2	-4.726e+00	0.0141	1690.0	0.66%	1593.5	0.63%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-2	-4.620e+00	0.0156	4481.0	1.76%	4324.2	1.70%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-4.556e+00	0.0166	1221.0	0.48%	1141.6	0.45%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-4.402e+00	0.0193	7065.0	2.77%	6874.2	2.70%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-4.358e+00	0.0201	32100.0	12.59%	31700.4	12.44%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-4.295e+00	0.0213	3277.0	1.29%	3151.0	1.24%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-4.025e+00	0.0278	779.0	0.31%	721.2	0.28%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.987e+00	0.0288	2026.0	0.79%	1932.0	0.76%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.962e+00	0.0294	824.0	0.32%	765.6	0.30%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-3.953e+00	0.0295	1354.0	0.53%	1278.8	0.50%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.935e+00	0.0300	5864.0	2.30%	5704.5	2.24%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-3.927e+00	0.0301	9689.0	3.80%	9483.2	3.72%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-3.843e+00	0.0326	20576.0	8.07%	20281.1	7.96%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.794e+00	0.0341	8332.0	3.27%	8146.5	3.20%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-3.437e+00	0.0486	5538.0	2.17%	5398.3	2.12%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-3.406e+00	0.0500	296.0	0.12%	265.8	0.10%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.365e+00	0.0519	622.0	0.24%	577.3	0.23%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-3.321e+00	0.0540	6604.0	2.59%	6455.6	2.53%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.278e+00	0.0562	2193.0	0.86%	2109.3	0.83%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-1	-3.175e+00	0.0621	1196.0	0.47%	1136.3	0.45%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-3.139e+00	0.0642	83.0	0.03%	68.2	0.03%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-3.101e+00	0.0664	11773.0	4.62%	11584.3	4.55%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-1	-3.005e+00	0.0729	11249.0	4.41%	11070.0	4.34%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-2.969e+00	0.0753	7299.0	2.86%	7156.3	2.81%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.829e+00	0.0863	1136.0	0.45%	1083.0	0.43%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.805e+00	0.0882	3460.0	1.36%	3367.6	1.32%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-2.788e+00	0.0894	16971.0	6.65%	16763.6	6.58%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-2.723e+00	0.0951	15857.0	6.22%	15660.9	6.15%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.662e+00	0.1007	3400.0	1.33%	3312.7	1.30%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.655e+00	0.1011	9553.0	3.75%	9404.8	3.69%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.645e+00	0.1018	1961.0	0.77%	1895.6	0.74%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.619e+00	0.1041	7156.0	2.81%	7029.3	2.76%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-2.566e+00	0.1094	53279.0	20.89%	52941.7	20.78%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.478e+00	0.1191	3446.0	1.35%	3364.0	1.32%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.474e+00	0.1192	5265.0	2.06%	5162.1	2.03%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.430e+00	0.1241	7085.0	2.78%	6967.2	2.73%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-1	-2.351e+00	0.1339	14308.0	5.61%	14144.0	5.55%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.325e+00	0.1370	2266.0	0.89%	2203.7	0.86%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.249e+00	0.1474	5817.0	2.28%	5718.4	2.24%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.226e+00	0.1503	6646.0	2.61%	6541.0	2.57%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.134e+00	0.1644	1272.0	0.50%	1229.5	0.48%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.123e+00	0.1656	16491.0	6.47%	16331.8	6.41%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.078e+00	0.1726	32466.0	12.73%	32245.2	12.66%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.048e+00	0.1774	22984.0	9.01%	22801.5	8.95%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.003e+00	0.1849	8326.0	3.26%	8220.6	3.23%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.969e+00	0.1908	369.0	0.14%	348.1	0.14%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.968e+00	0.1908	1863.0	0.73%	1815.5	0.71%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.951e+00	0.1930	20406.0	8.00%	20242.8	7.94%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.943e+00	0.1939	88.0	0.03%	78.0	0.03%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.583e+00	0.2772	12883.0	5.05%	12781.4	5.02%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.535e+00	0.2900	33129.0	12.99%	32967.7	12.94%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.508e+00	0.2970	17220.0	6.75%	17108.1	6.71%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.505e+00	0.2970	363.0	0.14%	348.6	0.14%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.502e+00	0.2970	582.0	0.23%	563.5	0.22%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.419e+00	0.3217	3465.0	1.36%	3421.6	1.34%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.218e+00	0.3921	5445.0	2.14%	5401.8	2.12%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.109e+00	0.4360	4921.0	1.93%	4886.8	1.92%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.075e+00	0.4498	2159.0	0.85%	2138.7	0.84%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-8.853e-01	0.5419	248.0	0.10%	244.6	0.10%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-8.513e-01	0.5590	2644.0	1.04%	2632.6	1.03%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-8.258e-01	0.5717	4730.0	1.85%	4715.5	1.85%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-8.145e-01	0.5765	1095.0	0.43%	1089.5	0.43%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.774e-01	0.5965	1728.0	0.68%	1722.1	0.68%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-7.662e-01	0.6015	1490.0	0.58%	1485.8	0.58%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-6.743e-01	0.6574	7929.0	3.11%	7924.6	3.11%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.709e-01	0.6577	5565.0	2.18%	5562.7	2.18%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.324e-01	0.6816	67014.0	26.28%	66974.1	26.29%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.918e-01	0.7078	66090.0	25.92%	66063.6	25.93%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.523e-01	0.7341	39132.0	15.35%	39133.3	15.36%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.247e-01	0.7525	948.0	0.37%	954.0	0.37%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-4.670e-01	0.7949	770.0	0.30%	778.6	0.31%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-4.611e-01	0.7973	68224.0	26.75%	68240.2	26.78%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.096e-01	0.8370	16228.0	6.36%	16267.0	6.38%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-3.703e-01	0.8681	41858.0	16.41%	41915.5	16.45%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.477e-01	0.8854	23638.0	9.27%	23697.8	9.30%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-3.225e-01	0.9054	8737.0	3.43%	8784.8	3.45%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.203e-01	0.9054	1863.0	0.73%	1888.0	0.74%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.129e-01	0.9090	850.0	0.33%	867.6	0.34%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.074e-01	0.9114	19067.0	7.48%	19134.1	7.51%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.965e-01	0.9188	7088.0	2.78%	7136.7	2.80%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.376e-01	0.9719	4445.0	1.74%	4494.1	1.76%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.919e-01	1.0000	118.0	0.05%	128.7	0.05%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.828e-01	1.0000	38988.0	15.29%	39131.0	15.36%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.690e-01	1.0000	9084.0	3.56%	9171.8	3.60%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.495e-01	1.0000	23788.0	9.33%	23927.5	9.39%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.420e-01	1.0000	4738.0	1.86%	4810.6	1.89%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.022e-01	1.0000	1036.0	0.41%	1077.3	0.42%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.017e-01	1.0000	4643.0	1.82%	4727.7	1.86%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-8.936e-02	1.0000	20942.0	8.21%	21114.8	8.29%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.803e-02	1.0000	4846.0	1.90%	4937.7	1.94%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.385e-02	1.0000	5829.0	2.29%	5935.4	2.33%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.585e-02	1.0000	5564.0	2.18%	5678.9	2.23%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.458e-02	1.0000	1100.0	0.43%	1153.2	0.45%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.076e-02	1.0000	6592.0	2.58%	6719.5	2.64%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-4.353e-02	1.0000	27388.0	10.74%	27634.1	10.85%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.719e-02	1.0000	94.0	0.04%	112.1	0.04%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.703e-02	1.0000	4171.0	1.64%	4283.1	1.68%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.676e-02	1.0000	19914.0	7.81%	20141.2	7.90%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.321e-02	1.0000	8805.0	3.45%	8968.2	3.52%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-3.161e-02	1.0000	34210.0	13.41%	34502.9	13.54%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-2.855e-02	1.0000	2870.0	1.13%	2970.7	1.17%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.362e-02	1.0000	2624.0	1.03%	2724.5	1.07%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.531e-02	1.0000	1169.0	0.46%	1243.1	0.49%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.208e-02	1.0000	10763.0	4.22%	10984.2	4.31%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-9.096e-03	1.0000	24196.0	9.49%	24526.1	9.63%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-8.482e-03	1.0000	25857.0	10.14%	26200.6	10.28%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.910e-03	1.0000	2459.0	0.96%	2580.2	1.01%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-6.821e-03	1.0000	717.0	0.28%	784.2	0.31%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.787e-03	1.0000	386.0	0.15%	437.0	0.17%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.227e-03	1.0000	20293.0	7.96%	20637.2	8.10%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.191e-03	1.0000	26344.0	10.33%	26728.2	10.49%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-3.258e-03	1.0000	13420.0	5.26%	13717.9	5.38%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-2.331e-03	1.0000	618.0	0.24%	690.4	0.27%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-2.098e-03	1.0000	19958.0	7.83%	20331.6	7.98%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.903e-03	1.0000	24306.0	9.53%	24716.1	9.70%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.443e-03	1.0000	10022.0	3.93%	10308.4	4.05%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.246e-03	1.0000	41356.0	16.22%	41885.1	16.44%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.620e-04	1.0000	6097.0	2.39%	6339.3	2.49%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-6.610e-04	1.0000	17070.0	6.69%	17463.3	6.85%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.200e-04	1.0000	1770.0	0.69%	1915.8	0.75%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-6.500e-05	1.0000	1927.0	0.76%	2097.7	0.82%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-5.000e-05	1.0000	8312.0	3.26%	8658.1	3.40%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.200e-05	1.0000	1639.0	0.64%	1801.7	0.71%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.100e-05	1.0000	1410.0	0.55%	1561.7	0.61%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-3.800e-05	1.0000	6118.0	2.40%	6423.2	2.52%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-3.200e-05	1.0000	34950.0	13.71%	35618.8	13.98%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-2.600e-05	1.0000	9169.0	3.60%	9546.7	3.75%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.200e-05	1.0000	4970.0	1.95%	5266.6	2.07%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.200e-05	1.0000	25711.0	10.08%	26336.8	10.34%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-8.000e-06	1.0000	20549.0	8.06%	21129.3	8.29%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.000e-06	1.0000	27329.0	10.72%	27999.1	10.99%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.000e-06	1.0000	4099.0	1.61%	4392.8	1.72%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	8782.0	3.44%	9241.9	3.63%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	74546.0	29.23%	75637.4	29.69%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-0.000e+00	1.0000	30112.0	11.81%	30920.5	12.14%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-0.000e+00	1.0000	38996.0	15.29%	39957.7	15.68%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	141428.0	55.46%	142781.9	56.04%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	1786.0	0.70%	2048.5	0.80%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	3722.0	1.46%	4100.9	1.61%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-0.000e+00	1.0000	27947.0	10.96%	28940.3	11.36%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-0.000e+00	1.0000	11267.0	4.42%	12024.7	4.72%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	456.0	0.18%	643.3	0.25%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	7339.0	2.88%	8040.5	3.16%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	61139.0	23.97%	65041.2	25.53%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	83475.0	32.73%	86395.4	33.91%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	29015.0	11.38%	30573.5	12.00%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	16645.0	6.53%	18092.6	7.10%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	18020.0	7.07%	19314.3	7.58%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	21430.0	8.40%	24363.5	9.56%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	49123.0	19.26%	53232.6	20.89%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	15284.0	5.99%	17493.3	6.87%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	2106.0	0.83%	2755.1	1.08%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	19596.0	7.68%	20976.1	8.23%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	24566.0	9.63%	26620.4	10.45%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	71314.0	27.96%	74044.2	29.06%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	45835.0	17.97%	49279.8	19.34%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	56141.0	22.01%	58818.6	23.08%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	7206.0	2.83%	8728.3	3.43%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	70678.0	27.72%	72816.8	28.58%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	15736.0	6.17%	17052.4	6.69%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	3746.0	1.47%	4434.7	1.74%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	2279.0	0.89%	3178.3	1.25%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	16571.0	6.50%	17883.5	7.02%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	25152.0	9.86%	26810.9	10.52%