Information for 19-CTAATTAGRW (Motif 28)

A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A
Reverse Opposite:
C G A T A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G
p-value:1e-204
log p-value:-4.698e+02
Information Content per bp:1.905
Number of Target Sequences with motif304.0
Percentage of Target Sequences with motif58.35%
Number of Background Sequences with motif25.4
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets53.3 +/- 17.3bp
Average Position of motif in Background305.3 +/- 185.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--CTAATTAGRW
NGCTAATTAG--
 A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A
A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G A C G T A C G T

PAX4/MA0068.2/Jaspar

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CTAATTAGRW
CTAATTAG--
 A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:3
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CTAATTAGRW
CTAATTAG--
 A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A
A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T

ARGFX/MA1463.1/Jaspar

Match Rank:4
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-CTAATTAGRW
TCTAATTAAA-
 A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A
C A G T G A T C G A C T G T C A C G T A A C G T A G C T C T G A C T G A G T C A A C G T

LHX9/MA0701.2/Jaspar

Match Rank:5
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CTAATTAGRW
CTAATTAA--
 A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A
A G T C A G C T G T C A C G T A A C G T A C G T C T G A T C G A A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGRW
NCTAATTA---
 A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T

PRRX2/MA0075.3/Jaspar

Match Rank:7
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CTAATTAGRW
CTAATTAA--
 A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A
A G T C A G C T T G C A C G T A A C G T A C G T T C G A C T G A A C G T A C G T

EMX1/MA0612.2/Jaspar

Match Rank:8
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:CTAATTAGRW
CTAATTAN--
 A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A
A T G C A C G T G T C A C G T A A C G T A C G T C T G A T A C G A C G T A C G T

LHX6/MA0658.1/Jaspar

Match Rank:9
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-CTAATTAGRW
ACTAATTAGC-
 A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A
T C G A A G T C A G C T T C G A G T C A A G C T A G C T C T G A T C A G A G T C A C G T

PH0089.1_Isx/Jaspar

Match Rank:10
Score:0.88
Offset:-4
Orientation:reverse strand
Alignment:----CTAATTAGRW--
ACNNCTAATTAGNNNN
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T A G C T A G C G T A A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T