Information for 2-TGCTAGCCAATC (Motif 3)

A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C
Reverse Opposite:
C T A G C G T A A G C T A C G T A C T G A C T G A T G C C G A T C T G A A C T G G T A C C G T A
p-value:1e-333
log p-value:-7.671e+02
Information Content per bp:1.813
Number of Target Sequences with motif430.0
Percentage of Target Sequences with motif82.53%
Number of Background Sequences with motif32.9
Percentage of Background Sequences with motif1.79%
Average Position of motif in Targets257.6 +/- 144.1bp
Average Position of motif in Background304.6 +/- 209.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.96
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TGCTAGCCAATC-
-ACTAGCCAATCA
 A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C A C G T
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.70
Offset:4
Orientation:forward strand
Alignment:TGCTAGCCAATC--
----AGCCAATCGG
 A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

HAP2/Literature(Harbison)/Yeast

Match Rank:3
Score:0.70
Offset:6
Orientation:forward strand
Alignment:TGCTAGCCAATC
------CCAAT-
 A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T

HAP3/Literature(Harbison)/Yeast

Match Rank:4
Score:0.70
Offset:6
Orientation:forward strand
Alignment:TGCTAGCCAATC
------CCAAT-
 A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T

HAP5/Literature(Harbison)/Yeast

Match Rank:5
Score:0.70
Offset:6
Orientation:forward strand
Alignment:TGCTAGCCAATC
------CCAAT-
 A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T

HAP5(MacIsaac)/Yeast

Match Rank:6
Score:0.70
Offset:6
Orientation:forward strand
Alignment:TGCTAGCCAATC
------CCAAT-
 A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T

HAP3(MacIsaac)/Yeast

Match Rank:7
Score:0.70
Offset:6
Orientation:forward strand
Alignment:TGCTAGCCAATC
------CCAAT-
 A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T

NFYC/MA1644.1/Jaspar

Match Rank:8
Score:0.69
Offset:4
Orientation:forward strand
Alignment:TGCTAGCCAATC---
----AGCCAATCAGA
 A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

NFYA/MA0060.3/Jaspar

Match Rank:9
Score:0.69
Offset:4
Orientation:forward strand
Alignment:TGCTAGCCAATC---
----AACCAATCAGA
 A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

HAP3/MA0314.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGCTAGCCAATC---
TCTNAACCAATCAGA
 A C G T A C T G A G T C A G C T C G T A A T C G A G T C A G T C G T C A C T G A A C G T G A T C A C G T A C G T A C G T
C G A T G A T C G A C T A T C G T C G A C T G A A G T C A G T C C G T A C G T A A C G T T A G C C T G A C A T G T G C A