Information for 6-CAAGTAACAA (Motif 6)

A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A
Reverse Opposite:
C G A T C G A T C T A G A C G T C G A T T G C A A T G C G A C T G A C T A T C G
p-value:1e-301
log p-value:-6.951e+02
Information Content per bp:1.809
Number of Target Sequences with motif438.0
Percentage of Target Sequences with motif84.07%
Number of Background Sequences with motif76.0
Percentage of Background Sequences with motif4.12%
Average Position of motif in Targets253.7 +/- 132.8bp
Average Position of motif in Background235.9 +/- 179.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)2.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NAC078/MA1677.1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CAAGTAACAA
AACAAGAAACAT
 A C G T A C G T A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A
G C T A C T G A A G T C C G T A G T C A A C T G G C T A G C T A C G T A G A T C G T C A C G A T

ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CAAGTAACAA
ACACGYWAYC-
 A C G T A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A
C T G A A G T C C G T A G T A C C T A G A G C T G C T A C G T A G A T C A G T C A C G T

ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAAGTAACAA
ACACGTWAYC-
 A C G T A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A
C T G A A G T C C G T A G T A C A C T G G A C T G C T A C G T A G A C T A G T C A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAAGTAACAA----
AAAAATAACAAACGG
 A C G T A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A A C G T A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

lbe/MA0231.1/Jaspar

Match Rank:5
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CAAGTAACAA
----TAACTA
 A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C G A C T C T G A

At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CAAGTAACAA
--AGTARAAW
 A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A
A C G T A C G T C G T A A C T G A C G T C T G A C T G A T C G A T G C A C G T A

ovo/dmmpmm(Down)/fly

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAAGTAACAA
AAAAGTAACGG
 A C G T A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A
G C T A T C G A G T C A G C T A A C T G A C G T G T C A G T C A A T G C C T A G C A T G

HMBOX1/MA0895.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAAGTAACAA--
--GTTAACTAGN
 A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A A C G T A C G T
A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

gt/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CAAGTAACAA
---GTAAAAA
 A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A
A C G T A C G T A C G T A T C G G A C T G T C A C G T A C G A T C G T A C G T A

DMRTA2/MA1478.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAAGTAACAA--
AATGTAACAATT
 A T G C C T G A C T G A A T C G A C G T C G T A C G T A G A T C C G T A G C T A A C G T A C G T
T G C A G C T A G C A T C T A G G A C T C G T A C G T A T G A C T C G A C G T A G C A T C G A T