Information for 1-AAGTTGCTAGCC (Motif 1)

C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C
Reverse Opposite:
C T A G C T A G A G T C A G C T C G T A C T A G A G T C T G C A C T G A G T A C A C G T C G A T
p-value:1e-48
log p-value:-1.107e+02
Information Content per bp:1.877
Number of Target Sequences with motif242.0
Percentage of Target Sequences with motif46.45%
Number of Background Sequences with motif16.7
Percentage of Background Sequences with motif4.57%
Average Position of motif in Targets318.8 +/- 74.2bp
Average Position of motif in Background3002814.8 +/- 3698194.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HSFC1/MA1667.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTGCTAGCC
GAAGCTTCTAG--
 A C G T C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C
A C T G C G T A C G T A A T C G G T A C G C A T C G A T A T G C A G C T T C G A C T A G A C G T A C G T

RFX1/MA0365.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAGTTGCTAGCC
-GGTTGCCA---
 C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C
A C G T A T C G A C T G A C G T A C G T C T A G A G T C A G C T C G T A A C G T A C G T A C G T

bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTGCTAGCC
CAAGTTGC-----
 A C G T C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C
A G T C C G T A C G T A A T C G A C G T C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

Vts1p(SAM)/Saccharomyces_cerevisiae-RNCMPT00082-PBM/HughesRNA

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AAGTTGCTAGCC
----NGCTGGCC
 C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C
A C G T A C G T A C G T A C G T A G C T A C T G A G T C C G A T A C T G A C T G G A T C A T G C

Vts1p(SAM)/Saccharomyces_cerevisiae-RNCMPT00111-PBM/HughesRNA

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AAGTTGCTAGCC
----NGCTGGCC
 C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C
A C G T A C G T A C G T A C G T A G C T A C T G A G T C C A G T A C T G A C T G G T A C A T G C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AAGTTGCTAGCC
CTGTTGCTAGGS
 C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AAGTTGCTAGCC---
VHNHTGCTTGNYNNY
 C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C A C G T A C G T A C G T
T C A G G C T A A G T C G C A T A C G T A C T G A G T C A C G T A C G T A C T G C A T G A G C T G T A C A C G T A G C T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTGCTAGCC--
NCCGTTGCTANGNGN
 A C G T C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AAGTTGCTAGCC
----TGCCAGCB
 C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C
A C G T A C G T A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

FZF1/MA0298.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AAGTTGCTAGCC
----TGATAG--
 C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T C G T A A C T G A C G T A C G T