Information for 19-CGGGACAAATAC (Motif 16)

A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A G T C A C T G
p-value:1e-16
log p-value:-3.828e+01
Information Content per bp:1.530
Number of Target Sequences with motif248.0
Percentage of Target Sequences with motif47.60%
Number of Background Sequences with motif74.9
Percentage of Background Sequences with motif20.53%
Average Position of motif in Targets331.9 +/- 76.3bp
Average Position of motif in Background3467917.0 +/- 3566678.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown4/Drosophila-Promoters/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CGGGACAAATAC----
----AAAAATACCRMA
 A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C G T A C G T A G C T A C T G A A C G T G T C A A G T C A G T C C T G A G T C A G C T A

EDS1/MA0294.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGGGACAAATAC
-CGGAAAAAT--
 A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C
A C G T A G T C A C T G A C T G C G T A C G T A G T C A C G T A C G T A G A C T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGGGACAAATAC
-GGAACAAAGR-
 A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Tv_0258(RRM)/Trichomonas_vaginalis-RNCMPT00258-PBM/HughesRNA

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CGGGACAAATAC
----ACAAACA-
 A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C
A C G T A C G T A C G T A C G T G C T A A G T C G T C A T C G A C G T A G T A C C G T A A C G T

ID1(C2H2(Zn))/Zea mays/AthaMap

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGGGACAAATAC
AAAACGACAAA---
 A C G T A C G T A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C
C G T A C G T A C G T A C T G A T A G C C T A G G T C A G T A C C T G A C G T A C T G A A C G T A C G T A C G T

sd/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CGGGACAAATAC-
----ANAAATNCA
 A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C A C G T
A C G T A C G T A C G T A C G T C G T A A C G T C G T A G T A C C G T A A C G T A C G T A G C T C G A T

PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CGGGACAAATAC
----GCAAACAM
 A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C
A C G T A C G T A C G T A C G T C T A G A G T C C G T A G T C A C G T A A G T C C G T A G T A C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGGGACAAATAC-
ACCGTGACTAATTNN
 A C G T A C G T A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CGGGACAAATAC
MAAAAMGACAAA---
 A C G T A C G T A C G T A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C
T G C A C G T A C G T A C G T A T G C A T G A C A C T G G T C A A G T C C T G A T C G A T C G A A C G T A C G T A C G T

FMR1(KH)/Homo_sapiens-RNCMPT00016-PBM/HughesRNA

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGGGACAAATAC
--GGACAAG---
 A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C
A C G T A C G T A C T G A C T G C G T A A G T C C T G A C T G A C T A G A C G T A C G T A C G T