Information for 11-GCAAAACTGC (Motif 22)

A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C T G A G T C
p-value:1e-6
log p-value:-1.554e+01
Information Content per bp:1.530
Number of Target Sequences with motif250.0
Percentage of Target Sequences with motif47.98%
Number of Background Sequences with motif112.4
Percentage of Background Sequences with motif30.80%
Average Position of motif in Targets441.7 +/- 86.2bp
Average Position of motif in Background3222862.9 +/- 3305513.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ng_0261(RRM)/Naegleria_gruberi-RNCMPT00261-PBM/HughesRNA

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GCAAAACTGC
-CAAAATT--
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C
A C G T A G T C C G T A C G T A C G T A C G T A G A C T A G C T A C G T A C G T

prd/dmmpmm(Down)/fly

Match Rank:2
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GCAAAACTGC
---AAACTG-
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C
A C G T A C G T A C G T T C G A G T C A G C T A A G T C A G C T T C A G A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCAAAACTGC----
GAAAAAATTGCAAGG
 A C G T A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

Pp_0229(RRM)/Physcomitrella_patens-RNCMPT00229-PBM/HughesRNA

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCAAAACTGC
-AAAAACA--
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C
A C G T G T C A G T C A C G T A G T C A C G T A A G T C C G T A A C G T A C G T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCAAAACTGC--
--NHAACBGYYV
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A

CUP2/MA0287.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCAAAACTGC
CAGCAAAAATG-
 A C G T A C G T A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C
A G T C C G T A A C T G G T A C C T G A T C A G C G T A C G T A C T G A C G A T C T A G A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAACTGC
CAATTGCAAAAATAT
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

DAL82(MacIsaac)/Yeast

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCAAAACTGC--
--AAANTTGCGC
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C A C G T A C G T
A C G T A C G T C T G A G C T A C G T A T C A G C G A T G A C T T C A G G A T C C T A G G A T C

Sf3b4(RRM)/Danio_rerio-RNCMPT00224-PBM/HughesRNA

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCAAAACTGC
NCAAAAG---
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C
C A G T A G T C C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCAAAACTGC-----
CGACCAACTGCCATGC
 A C G T A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C