Information for 7-TCCTTATT (Motif 26)

A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T C G T A C G T A A C T G A C T G C G T A
p-value:1e0
log p-value:-0.000e+00
Information Content per bp:1.947
Number of Target Sequences with motif331.0
Percentage of Target Sequences with motif63.53%
Number of Background Sequences with motif296.3
Percentage of Background Sequences with motif81.21%
Average Position of motif in Targets214.6 +/- 66.7bp
Average Position of motif in Background3250794.9 +/- 3770715.9bp
Strand Bias (log2 ratio + to - strand density)4.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TCCTTATT
GTCCTAA--
 A C G T A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T
C T A G A C G T A G T C A G T C A C G T T C G A G C T A A C G T A C G T

ap/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:TCCTTATT-
---TNATTA
 A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C G A T T C G A A C G T A C G T T C G A

Odsh/dmmpmm(Noyes_hd)/fly

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TCCTTATT--
NNCTAATTAA
 A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T A C G T A C G T
G C T A A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A G T C A

CG9876/MA0184.1/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TCCTTATT-
--CTAATTA
 A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T A C G T
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A

Tv_0226(RRM)/Trichomonas_vaginalis-RNCMPT00226-PBM/HughesRNA

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TCCTTATT--
--NTTATTGN
 A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C A C G T A C G T C G T A A C G T A C G T C T A G A C G T

PhdP/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TCCTTATT--
NNTTAATTAN
 A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T A C G T A C G T
C T A G T A G C G A C T A C G T C G T A C G T A A C G T C A G T C G T A C T A G

TLX2/MA1577.1/Jaspar

Match Rank:7
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TCCTTATT--
--CTAATTAN
 A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A G C T C T G A T C A G

OdsH/MA0198.1/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TCCTTATT-
--CTAATTA
 A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T A C G T
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A

EN1/MA0027.2/Jaspar

Match Rank:9
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TCCTTATT--
--CTAATTAG
 A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G C A T T C G A C G T A A C G T A C G T C T G A T A C G

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TCCTTATT-
-NCTAATTA
 A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T A C G T
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A