Information for 11-THTGCCHTGGCA (Motif 9)

G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A
Reverse Opposite:
C A G T T C A G A G T C G T A C T G C A C A T G C T A G C T A G G T A C G C T A C G A T C T G A
p-value:1e-27
log p-value:-6.386e+01
Information Content per bp:1.582
Number of Target Sequences with motif218.0
Percentage of Target Sequences with motif41.84%
Number of Background Sequences with motif34.3
Percentage of Background Sequences with motif9.40%
Average Position of motif in Targets181.7 +/- 26.9bp
Average Position of motif in Background3421139.9 +/- 3240065.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-THTGCCHTGGCA-
ACATGCCCGGGCAT
 A C G T G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A A C G T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

RFX1/RFX1_YPD/[](Harbison)/Yeast

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:THTGCCHTGGCA--
-TTGCCATGGCAAC
 G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A A C G T A C G T
A C G T A C G T G A C T T C A G A G T C A G T C C T G A A G C T C T A G T C A G A G T C C T G A C G T A T A G C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:THTGCCHTGGCA---
-TTGCCATGGCAACN
 G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A A C G T A C G T A C G T
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:THTGCCHTGGCA---
-TTGCCATGGCAACC
 G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A A C G T A C G T A C G T
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX1(MacIsaac)/Yeast

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:THTGCCHTGGCA--
GTTGCCATGGCAAC
 G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A A C G T A C G T
T C A G G A C T G A C T T C A G T G A C G A T C T G C A A C G T C T A G T C A G A T G C C T G A C G T A A T G C

RFX3/MA0798.2/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:THTGCCHTGGCA----
--TNCCATAGCAACNN
 G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:THTGCCHTGGCA
--TGCCCAGNHW
 G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

TP53/MA0106.3/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--THTGCCHTGGCA----
AACATGCCCGGGCATGTC
 A C G T A C G T G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A A C G T A C G T A C G T A C G T
C T G A C T G A G A T C C G T A G C A T T C A G G A T C G A T C A G T C C T A G C T A G C T A G A T G C G C T A G C A T C T A G G A C T G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--THTGCCHTGGCA--
CGGTTGCCATGGCAAC
 A C G T A C G T G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:THTGCCHTGGCA---
GTTGCCATGGCAACM
 G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A A C G T A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C