Information for 19-TCTTTTAAAA (Motif 19)

A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A
Reverse Opposite:
A C G T A C G T A G C T A C G T C G T A C G T A C G T A C G T A A C T G C G T A
p-value:1e-311
log p-value:-7.179e+02
Information Content per bp:1.978
Number of Target Sequences with motif203.0
Percentage of Target Sequences with motif43.01%
Number of Background Sequences with motif265.8
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets127.9 +/- 22.0bp
Average Position of motif in Background92.5 +/- 76.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TCTTTTAAAA-
GCTCGTAAAAA
 A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCTTTTAAAA--
CCTTTTATAGNC
 A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TCTTTTAAAA---
---TTTGAAACCG
 A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCTTTTAAAA---
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCTTTTAAAA-
-CYHATAAAAN
 A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T
A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCTTTTAAAA
NCYAATAAAA
 A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TCTTTTAAAA-
--ATTTGAATT
 A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TCTTTTAAAA---
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCTTTTAAAA
CCYMATAAAA
 A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

ZNF384/MA1125.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCTTTTAAAA
TTTTTTTTTANN
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A
C G A T C G A T C G A T C G A T G C A T G C A T C G A T G C A T C A G T G C T A C G T A G C T A