Information for 1-TAGGTCATAGCC (Motif 1)

C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C
Reverse Opposite:
T C A G C T A G G A T C C G A T C T G A A G C T T C A G C T G A A G T C A G T C G A C T G T C A
p-value:1e-1187
log p-value:-2.734e+03
Information Content per bp:1.942
Number of Target Sequences with motif291.0
Percentage of Target Sequences with motif53.59%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.7 +/- 29.7bp
Average Position of motif in Background110.5 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TAGGTCATAGCC
AAWCTAGGTCARDNN-
 A C G T A C G T A C G T A C G T C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCATAGCC
AAYTAGGTCA-----
 A C G T A C G T A C G T C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCATAGCC
AAYTAGGTCA-----
 A C G T A C G T A C G T C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T A C G T

RARB(var.3)/MA1552.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TAGGTCATAGCC--
AAGGTCATGACCTT
 C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C A C G T A C G T
C T G A T C G A C T A G C A T G A C G T A G T C C T G A G A C T T C A G T C G A G T A C T G A C A G C T G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TAGGTCATAGCC
-AGGTCA-----
 C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

NR1H4/MA1110.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TAGGTCATAGCC
NAGGTCATTGA-
 C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A A C G T

RORB/MA1150.1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCATAGCC
AATTAGGTCAC----
 A C G T A C G T A C G T C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCATAGCC
ATCAAGGTCA-----
 A C G T A C G T A C G T C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

RARG(var.3)/MA1553.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TAGGTCATAGCC--
AAGGTCATGACCTT
 C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C A C G T A C G T
C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A C T T C A G G C T A G T A C G T A C A G C T G A C T

NR2F2/MA1111.1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TAGGTCATAGCC
CAAAGGTCAAA---
 A C G T A C G T C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C
G A T C G T C A C G T A C T G A C A T G C T A G A C G T G A T C C T G A C T G A C T G A A C G T A C G T A C G T