Information for 8-GCAAGCATTA (Motif 17)

A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A G C T A C T G A G T C A C G T A C G T A C T G A G T C
p-value:1e-642
log p-value:-1.480e+03
Information Content per bp:1.982
Number of Target Sequences with motif244.0
Percentage of Target Sequences with motif44.94%
Number of Background Sequences with motif22.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets38.9 +/- 38.4bp
Average Position of motif in Background106.6 +/- 95.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCAAGCATTA-
-AAACMATTAN
 A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A A C G T
A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCAAGCATTA
-CAAGCTT--
 A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T

BARX2/MA1471.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAAGCATTA-
AAAAACCATTAC
 A C G T A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A A C G T
C T G A C G T A G C T A C G T A T G C A G A T C T G A C T C G A C A G T G A C T C G T A T A G C

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAAGCATTA--
--NNGGATTAGN
 A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAAGCATTA--
--VRGGATTARN
 A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAAGCATTA
--NGGGATTA
 A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

OTX2/MA0712.2/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCAAGCATTA---
-AAGGGATTAGAA
 A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A A C G T A C G T A C G T
A C G T G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

HOXB4/MA1499.1/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCAAGCATTA-
---ATCATTAG
 A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G

Isl1/MA1608.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCAAGCATTA---
--ATCCATTAGCA
 A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A A C G T A C G T A C G T
A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

HOXC4/MA1504.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCAAGCATTA-
---GTCATTAA
 A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A