Information for 25-CCTAAWTA (Motif 28)

A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A C G A T A C G T A C G T C G T A A C T G A C T G
p-value:1e-55
log p-value:-1.285e+02
Information Content per bp:1.946
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif15.47%
Number of Background Sequences with motif649.3
Percentage of Background Sequences with motif1.51%
Average Position of motif in Targets69.2 +/- 42.9bp
Average Position of motif in Background99.2 +/- 74.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CCTAAWTA
NCTAATTA
 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

VSX2/MA0726.1/Jaspar

Match Rank:2
Score:0.83
Offset:1
Orientation:forward strand
Alignment:CCTAAWTA-
-CTAATTAG
 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C G T
A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

PRRX2/MA0075.3/Jaspar

Match Rank:3
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CCTAAWTA-
-CTAATTAA
 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C G T
A C G T A G T C A G C T T G C A C G T A A C G T A C G T T C G A C T G A

LHX9/MA0701.2/Jaspar

Match Rank:4
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CCTAAWTA-
-CTAATTAA
 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C G T
A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A T C G A

HOXD3/MA0912.2/Jaspar

Match Rank:5
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CCTAAWTA-
-CTAATTAC
 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C G T
A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A A T G C

mix-a/MA0621.1/Jaspar

Match Rank:6
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CCTAAWTA---
NCTAATTAANN
 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T
G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:7
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:CCTAAWTA-
-CTAATTAA
 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C G T
A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

VSX1/MA0725.1/Jaspar

Match Rank:8
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CCTAAWTA-
-CTAATTAT
 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C G T
A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

EMX2/MA0886.1/Jaspar

Match Rank:9
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CCTAAWTA--
NCTAATTANN
 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C G T A C G T
T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C

EMX1/MA0612.2/Jaspar

Match Rank:10
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:CCTAAWTA-
-CTAATTAN
 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C G T
A C G T A T G C A C G T G T C A C G T A A C G T A C G T C T G A T A C G