Information for 3-TTCTAAGTTGCT (Motif 3)

A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T
Reverse Opposite:
C T G A C T A G A G T C C T G A C G T A A G T C C A G T A C G T C T G A A T C G G T C A C G T A
p-value:1e-1047
log p-value:-2.413e+03
Information Content per bp:1.842
Number of Target Sequences with motif261.0
Percentage of Target Sequences with motif48.07%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets140.8 +/- 26.0bp
Average Position of motif in Background66.8 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX7/MA1554.1/Jaspar

Match Rank:1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:TTCTAAGTTGCT--
-----CGTTGCTAT
 A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A T C G A G C T A G C T C T A G A T G C A G C T C T G A G A C T

PH0115.1_Nkx2-6/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTCTAAGTTGCT--
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PH0114.1_Nkx2-5/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTCTAAGTTGCT--
AAATTCAAGTGGNTTN
 A C G T A C G T A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

ZNF136/MA1588.1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTCTAAGTTGCT
GAATTCTTGGTTGAC
 A C G T A C G T A C G T A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T
T C A G C G T A T C G A C G A T A G C T G A T C A G C T C A G T C T A G C T A G G A C T C A G T C T A G C T G A G T A C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TTCTAAGTTGCT------
---NCCGTTGCTANGNGN
 A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TTCTAAGTTGCT----
----CTGTTGCTAGGS
 A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTCTAAGTTGCT----------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTCTAAGTTGCT--
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TTCTAAGTTGCT------
---NNCGTTGCTATGGNN
 A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

RFX1/MA0509.2/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TTCTAAGTTGCT------
----CTGTTGCTATGGCA
 A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A