Information for 1-CTGTAGWAGCTC (Motif 1)

A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
Reverse Opposite:
A C T G C T G A A C T G A G T C A C G T C G A T A G T C A G C T C G T A A G T C T C G A A C T G
p-value:1e-75
log p-value:-1.748e+02
Information Content per bp:1.799
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif93.10%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets362.1 +/- 76.0bp
Average Position of motif in Background207.4 +/- 44.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.37
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MET28/MA0332.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTGTAGWAGCTC
CTGTGG------
 A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
A G T C A C G T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

MET28(MacIsaac)/Yeast

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTGTAGWAGCTC
CTGTGG------
 A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
A G T C A C G T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

GCR1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTGTAGWAGCTC
--GAGGAAGCC-
 A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
A C G T A C G T A C T G C G A T A C T G A C T G C G T A C G T A A C T G A G T C A G T C A C G T

MET4(MacIsaac)/Yeast

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTGTAGWAGCTC
AACTGTGG------
 A C G T A C G T A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
C G T A T C G A A G T C A C G T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

RFX1/MA0365.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTGTAGWAGCTC
---TAGCAACC-
 A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
A C G T A C G T A C G T A C G T C T A G A C T G A G T C C G T A C G T A A G T C T A G C A C G T

MET4/MA0335.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTGTAGWAGCTC
AACTGTGG------
 A C G T A C G T A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
C G T A T C G A A G T C A C G T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

GCR1/MA0304.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTGTAGWAGCTC
---TGGAAGCC-
 A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
A C G T A C G T A C G T C G A T A T C G A T C G C G T A G C T A A C T G G T A C A G T C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTGTAGWAGCTC
GCTGTG-------
 A C G T A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

An_0287(RRM)/Aspergillus_nidulans-RNCMPT00287-PBM/HughesRNA

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGTAGWAGCTC
-CGTAGTA----
 A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
A C G T G T A C C A T G A C G T C G T A A C T G C G A T C G T A A C G T A C G T A C G T A C G T

che-1/MA0260.1/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTGTAGWAGCTC
-----GAAACC-
 A G T C A G C T C T A G A C G T C T G A A C T G C G T A C G T A T C A G A G T C A G C T T G A C
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C T G A A G T C A T G C A C G T