Information for 1-SCTCCCTGCT (Motif 2)

A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T
Reverse Opposite:
C G T A C T A G A G T C C G T A C T A G C T A G A C T G C G T A A C T G A T G C
p-value:1e-74
log p-value:-1.709e+02
Information Content per bp:1.906
Number of Target Sequences with motif80.0
Percentage of Target Sequences with motif91.95%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets264.5 +/- 75.0bp
Average Position of motif in Background216.3 +/- 3.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.64
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:SCTCCCTGCT---
-CCCCCTGCTGTG
 A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic2/MA1629.1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:SCTCCCTGCT-----
-CCCCCTGCTGTGNN
 A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C A G T C G A T C T A G C G T A C G A C T T C A G A T G C C A G T A T C G C G A T A C T G G T C A A C T G

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:SCTCCCTGCT---
--NNCCTGCTGNG
 A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-SCTCCCTGCT----
GGCCYCCTGCTGDGH
 A C G T A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

sna/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:SCTCCCTGCT
-CCACCTGNT
 A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T
A C G T A G T C G A T C G T C A A G T C G A T C A G C T A C T G G A C T A C G T

RBM5(RRM)/Homo_sapiens-RNCMPT00154-PBM/HughesRNA

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:SCTCCCTGCT
-CTCCTTC--
 A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T
A C G T A G T C A G C T A T G C A T G C A G C T A C G T A T G C A C G T A C G T

vfl/MA1462.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-SCTCCCTGCT-
NNCTACCTGCNN
 A C G T A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T A C G T
C A T G A G T C A G T C A C G T C T G A A G T C A T G C G A C T T C A G G T A C C G T A C A T G

Tag/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:SCTCCCTGCT
-CTACCTG--
 A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T
A C G T G A T C A C G T T C G A A T G C A G T C C G A T C T A G A C G T A C G T

CTCFL/MA1102.2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--SCTCCCTGCT
GCGCCCCCTGNN
 A C G T A C G T A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T
T A C G A G T C C T A G G T A C T A G C T A G C A G T C T A G C A C G T T A C G A T G C A G C T

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:SCTCCCTGCT---
-CCYCCYGCTGDG
 A T C G G T A C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A G T C A T G C G A T C A G T C G T A C G A C T C T A G A G T C C G A T A C T G C A G T A C T G