Information for 2-GGAAWACTGA (Motif 3)

A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A
Reverse Opposite:
A C G T A G T C C G T A A C T G A C G T C G T A A C G T C G A T A G T C A G T C
p-value:1e-73
log p-value:-1.684e+02
Information Content per bp:1.877
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif93.10%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif1.22%
Average Position of motif in Targets93.3 +/- 41.7bp
Average Position of motif in Background167.6 +/- 56.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)2.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Initiator/Drosophila-Promoters/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GGAAWACTGA-
---CRACTGAN
 A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A A C G T
A C G T A C G T A C G T T G A C C T A G C T G A G A T C A G C T A T C G T G C A C G T A

SIX1/MA1118.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGAAWACTGA--
-GTAACCTGATA
 A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A A C G T A C G T
A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

prd/dmmpmm(Down)/fly

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GGAAWACTGA
---AAACTG-
 A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A
A C G T A C G T A C G T T C G A G T C A G C T A A G T C A G C T T C A G A C G T

YOX1/Literature(Harbison)/Yeast

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGAAWACTGA--
ACAATANTGAAA
 A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A A C G T A C G T
C G T A A T C G C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C C T A G

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGAAWACTGA---
-GWAAYHTGABMC
 A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A A C G T A C G T A C G T
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

SIX2/MA1119.1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGAAWACTGA---
AACTGAAACCTGATAC
 A C G T A C G T A C G T A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A A C G T A C G T A C G T
G C T A G C T A T G A C C G A T C A T G G C T A G T C A C T G A G A T C G T A C G C A T C T A G C G T A A C G T G T C A G A T C

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGAAWACTGA-----
TGWAAYCTGABACCB
 A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A A C G T A C G T A C G T A C G T A C G T
C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G

STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GGAAWACTGA---
-----AGTGAVND
 A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T C G G A C T T C A G C G T A T C G A C G A T C T A G

EDS1/MA0294.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGAAWACTGA
CGGAAAAAT--
 A C G T A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A
A G T C A C T G A C T G C G T A C G T A G T C A C G T A C G T A G A C T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGAAWACTGA
--NNNANTGA
 A C T G A C T G G C T A C G T A G C A T C G T A A G T C A C G T A C T G G T C A
A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A