Information for 3-AGCTSAGGGC (Motif 6)

C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C
Reverse Opposite:
C T A G A G T C A G T C T A G C A C G T A T G C C G T A C T A G A G T C G C A T
p-value:1e-71
log p-value:-1.638e+02
Information Content per bp:1.780
Number of Target Sequences with motif77.0
Percentage of Target Sequences with motif88.51%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets208.9 +/- 91.5bp
Average Position of motif in Background362.7 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGCTSAGGGC-
GGCTCAGCGCG
 C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C A C G T
T C A G T A C G A G T C G A C T G A T C C G T A C A T G T A G C T A C G A T G C T A C G

CDC5/MA0579.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGCTSAGGGC-
GGCTCAGCGCG
 C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C A C G T
T C A G T A C G A G T C G A C T G A T C C G T A C A T G T A G C T A C G A T G C T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGCTSAGGGC
NGCTN-----
 C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGCTSAGGGC
AAAATGCTGACT--
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T A C G T A C G T

SWI5/Literature(Harbison)/Yeast

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGCTSAGGGC
GGCTGA----
 C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C
A C G T A C T G A G T C A C G T A C T G C T A G A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGCTSAGGGC--
AGGTCAAGGTCA
 C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGCTSAGGGC--
AGGTCAAGGTCA
 C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C A C G T A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PL0001.1_hlh-11/Jaspar

Match Rank:8
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------AGCTSAGGGC
TCTGATCAGCTGATCG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C
C G A T G A C T G A C T C T A G T C G A G C A T G T A C C G T A A T C G T A G C G A C T A C T G C G T A A C G T T A G C C A T G A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGCTSAGGGC
HCAGCTGDTN--
 A C G T A C G T C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T

ZBTB6/MA1581.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGCTSAGGGC-
NNGGCTCAAGGNN
 A C G T A C G T C G T A A C T G A G T C A C G T A T C G C G T A A C T G C T A G A C T G G A T C A C G T
A T G C A C T G C T A G C A T G A G T C C A G T A T G C G T C A T C G A C A T G A T C G T C G A G T A C