Information for 12-CTGCTCTTTCTA (Motif 11)

A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G A G T C C G T A A C T G
p-value:1e-13
log p-value:-2.997e+01
Information Content per bp:1.984
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif48.28%
Number of Background Sequences with motif36.6
Percentage of Background Sequences with motif10.71%
Average Position of motif in Targets263.0 +/- 8.6bp
Average Position of motif in Background4307454.4 +/- 3826515.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tb_0220(RRM)/Trypanosoma_brucei-RNCMPT00220-PBM/HughesRNA

Match Rank:1
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CTGCTCTTTCTA
-----CTTTCTN
 A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A G T C A G C T A C G T A G C T A G T C A G C T G A C T

Tb_0253(RRM)/Trypanosoma_brucei-RNCMPT00253-PBM/HughesRNA

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CTGCTCTTTCTA
----TTTTTCT-
 A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A
A C G T A C G T A C G T A C G T A G C T A G C T A C G T A G C T A C G T A G T C A C G T A C G T

PTBP1(RRM)/Homo_sapiens-RNCMPT00269-PBM/HughesRNA

Match Rank:3
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CTGCTCTTTCTA
----ACTTTCT-
 A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A
A C G T A C G T A C G T A C G T G T C A A G T C A C G T C G A T C G A T A G T C A G C T A C G T

br-Z4/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CTGCTCTTTCTA
----TCTTTAC-
 A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C G T A C G T G T A C A G C T A C G T

BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGCTCTTTCTA-
-TTCTCTCTCYTC
 A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A A C G T
A C G T G C A T G A C T G T A C A C G T A G T C G C A T A G T C G C A T A T G C G A T C C G A T G T A C

PRDM4/MA1647.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTGCTCTTTCTA
-GTCTGTTTCTA
 A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A
A C G T C T A G C A G T T A G C C G A T T C A G G C A T A G C T G C A T G T A C G C A T G C T A

Trl/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGCTCTTTCTA
TTGCTCTCTC--
 A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A
A G C T A G C T C A T G A G T C C A G T G T A C C G A T A T G C A G C T A G T C A C G T A C G T

PRDM1/MA0508.3/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTGCTCTTTCTA--
---TTCTTTCTCTT
 A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A A C G T A C G T
A C G T A C G T A C G T G A C T G C A T G T A C C G A T G C A T C G A T G T A C C G A T G T A C G A C T G A C T

MEF2B/MA0660.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTGCTCTTTCTA--
--GCTATTTATAGC
 A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A A C G T A C G T
A C G T A C G T C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C

FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTGCTCTTTCTA
CTTTCTCTCTCY-
 A C G T A G T C A C G T A C T G A G T C A C G T A G T C C G A T A C G T A C G T A G T C A C G T C G T A
A T G C G A C T A G C T A G C T A G T C A G C T T A G C A C G T G A T C A G C T A G T C A G T C A C G T