Information for 23-CCCCTTCTTTHA (Motif 22)

G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A
Reverse Opposite:
A C G T C T A G G C T A T G C A G C T A T C A G C T G A C G T A C T A G C T A G C T A G C A T G
p-value:1e-3
log p-value:-7.132e+00
Information Content per bp:1.703
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif42.53%
Number of Background Sequences with motif83.1
Percentage of Background Sequences with motif24.31%
Average Position of motif in Targets328.6 +/- 107.5bp
Average Position of motif in Background3568358.3 +/- 4252433.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSN4(MacIsaac)/Yeast

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTTCTTTHA
CCCCCTT------
 A C G T G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A
A T G C G T A C A G T C G T A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RBM5(RRM)/Homo_sapiens-RNCMPT00154-PBM/HughesRNA

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCCCTTCTTTHA
CTCCTTC-----
 G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A
A G T C A G C T A T G C A T G C A G C T A C G T A T G C A C G T A C G T A C G T A C G T A C G T

Tb_0230(RRM)/Trypanosoma_brucei-RNCMPT00230-PBM/HughesRNA

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCCCTTCTTTHA
GTCCTTCT----
 G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A
A C T G G A C T A G T C A G T C A C G T A C G T A G T C A G C T A C G T A C G T A C G T A C G T

MSN4/Literature(Harbison)/Yeast

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTTCTTTHA
NCCCCTG------
 A C G T G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A
A C G T A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AT/dmmpmm(Papatsenko)/fly

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CCCCTTCTTTHA-
---ATTCGTTCAT
 G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A A C G T
A C G T A C G T A C G T C G T A A C G T A C G T A G T C A C T G A C G T A C G T A G T C C G T A A C G T

TRA2(RRM)/Drosophila_melanogaster-RNCMPT00078-PBM/HughesRNA

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCCCTTCTTTHA
---CTTCTTC--
 G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A
A C G T A C G T A C G T T A G C A C G T A C G T A T G C A G C T A C G T A G T C A C G T A C G T

MSN2(MacIsaac)/Yeast

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTTCTTTHA
GCCCCTT------
 A C G T G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A
T A C G G A T C A G T C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

REF2(RRM)/Drosophila_melanogaster-RNCMPT00059-PBM/HughesRNA

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCCCTTCTTTHA
-GCCTTCT----
 G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A
A C G T A C T G A G T C A G T C A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCCCTTCTTTHA----
NNCATTCATTCATNNN
 G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

HuR(RRM)/Homo_sapiens-RNCMPT00032-PBM/HughesRNA

Match Rank:10
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CCCCTTCTTTHA
----TTATTTT-
 G T A C G A T C A G T C G A T C A C G T A G C T A G T C C G A T A C G T C G A T G A T C T G C A
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C A G T A C G T A C G T A C G T A C G T