Information for 7-TCCYRTRGTAAC (Motif 7)

A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T G T C A A G T C A G C T C G T A A G C T T C G A A C T G C T A G C G T A
p-value:1e-17
log p-value:-3.931e+01
Information Content per bp:1.842
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif56.32%
Number of Background Sequences with motif38.2
Percentage of Background Sequences with motif11.19%
Average Position of motif in Targets398.4 +/- 61.0bp
Average Position of motif in Background4061701.1 +/- 3755023.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX1/MA0509.2/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TCCYRTRGTAAC--
TNCCATAGCAACNN
 A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

RFX3/MA0798.2/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TCCYRTRGTAAC--
TNCCATAGCAACNN
 A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

RFX1/MA0365.1/Jaspar

Match Rank:3
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:TCCYRTRGTAAC-
-----TAGCAACC
 A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G A G T C C G T A C G T A A G T C T A G C

RFX5/MA0510.2/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TCCYRTRGTAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TCCYRTRGTAAC-
TTGCCATGGCAACC
 A C G T A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TCCYRTRGTAAC-
TTGCCATGGCAACN
 A C G T A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

RFX7/MA1554.1/Jaspar

Match Rank:7
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:TCCYRTRGTAAC-
----NTAGCAACG
 A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TCCYRTRGTAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TCCYRTRGTAAC---
TACCATAGCAACGGT
 A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TCCYRTRGTAAC--
--SCCTAGCAACAG
 A C G T A G T C A G T C A G C T C T G A A C G T C T G A A C T G C A G T C G T A C G T A A G T C A C G T A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G