Information for 2-CCTGTGATTAAT (Motif 2)

A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A G T C C G T A A C T G A C T G
p-value:1e-225
log p-value:-5.193e+02
Information Content per bp:1.968
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif70.00%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets111.2 +/- 12.3bp
Average Position of motif in Background150.5 +/- 4.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:CCTGTGATTAAT--
----TGATTGATGA
 A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CCTGTGATTAAT----
----TGATTRATGGCY
 A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CCTGTGATTAAT---
--NNTGATTGATGNN
 A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CCTGTGATTAAT---
---RTGATTKATRGN
 A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

PH0063.1_Hoxb8/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCTGTGATTAAT---
ACCGGCAATTAATAAA
 A C G T A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T A C G T A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

PBX2/MA1113.2/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCTGTGATTAAT---
--NNTGATTTATGNN
 A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:7
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CCTGTGATTAAT--
----TGATKGATGR
 A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

Arid3b/MA0601.1/Jaspar

Match Rank:8
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCTGTGATTAAT--
---NTAATTAATAT
 A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCTGTGATTAAT
GCTGTGGTTT--
 A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCTGTGATTAAT---
---ATGATKGATGRC
 A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C