Information for 14-CAATAAAT (Motif 21)

A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T C G T A A C G T A C G T C T A G
p-value:1e-67
log p-value:-1.547e+02
Information Content per bp:1.968
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif66.67%
Number of Background Sequences with motif1352.8
Percentage of Background Sequences with motif3.09%
Average Position of motif in Targets162.2 +/- 8.1bp
Average Position of motif in Background99.4 +/- 84.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CAATAAAT-
AAGCAATAAAAA
 A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

HOXB13/MA0901.2/Jaspar

Match Rank:2
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---CAATAAAT---
AACCAATAAAATTT
 A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

HOXA13/MA0650.2/Jaspar

Match Rank:3
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAT-
CCCAATAAAAC
 A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAT--
GGCCATAAATCA
 A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAT-
GGTAATAAAAA
 A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAT--
NGYCATAAAWCH
 A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----CAATAAAT----
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXD13/MA0909.2/Jaspar

Match Rank:8
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAT-
CCCAATAAAAC
 A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAT
RGCAATNAAA
 A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

CDX4/MA1473.1/Jaspar

Match Rank:10
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAT-
GGCAATAAAAC
 A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C