Information for 10-AGTGTTTC (Motif 15)

C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C
Reverse Opposite:
A C T G C T G A C G T A C G T A A T G C C G T A A G T C A C G T
p-value:1e-79
log p-value:-1.826e+02
Information Content per bp:1.930
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif67.78%
Number of Background Sequences with motif914.7
Percentage of Background Sequences with motif2.08%
Average Position of motif in Targets54.2 +/- 19.8bp
Average Position of motif in Background100.5 +/- 72.9bp
Strand Bias (log2 ratio + to - strand density)4.9
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM4/MA1647.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGTGTTTC--
GTCTGTTTCTA
 A C G T C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C A C G T A C G T
C T A G C A G T T A G C C G A T T C A G G C A T A G C T G C A T G T A C G C A T G C T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---AGTGTTTC
TTAAGTGCTT-
 A C G T A C G T A C G T C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGTGTTTC
ATTGTTA-
 C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C
C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AGTGTTTC
TTRAGTGSYK-
 A C G T A C G T A C G T C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGTGTTTC
ATTGTT--
 C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGTGTTTC
TTGAGTGSTT-
 A C G T A C G T A C G T C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

DMRTA2/MA1478.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGTGTTTC----
AATGTAACAATT
 C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C A C G T A C G T A C G T A C G T
T G C A G C T A G C A T C T A G G A C T C G T A C G T A T G A C T C G A C G T A G C A T C G A T

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----AGTGTTTC----
CNNNTATTGTTCNNNNN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGTGTTTC---
-CTGTTCCTGG
 C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C A C G T A C G T A C G T
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGTGTTTC----
AATCAATTGTTCCGCTA
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A T C G A C G T A C G T A G C T A G T C A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A