Database and Motifs High-scoring Motif Occurences Debugging Information Results in TSV Format Results in GFF3 Format


FIMO - Motif search tool

FIMO version 5.3.3, (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE LTR5B_sequences.fa
Database contains 445 sequences, 342283 residues

MOTIFS MA0007.3.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
MA0007.3 17 GGGAACACGGTGTACCC

Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
MA0007.3 Ar LTR5B_302 + 34 50 7.62e-08 0.0444 gggaacagaatgttccc
MA0007.3 Ar LTR5B_302 - 34 50 1.35e-07 0.0444 GGGAACATTCTGTTCCC
MA0007.3 Ar LTR5B_95 + 277 293 5.74e-07 0.116 agggacacagtgtactg
MA0007.3 Ar LTR5B_131 + 277 293 7.05e-07 0.116 agggacacgatgtactg
MA0007.3 Ar LTR5B_46 + 679 695 1.92e-06 0.209 gggcacagtacgttccc
MA0007.3 Ar LTR5B_46 - 679 695 2.13e-06 0.209 GGGAACGTACTGTGCCC
MA0007.3 Ar LTR5B_95 - 277 293 2.45e-06 0.209 CAGTACACTGTGTCCCT
MA0007.3 Ar LTR5B_131 - 277 293 3.08e-06 0.209 CAGTACATCGTGTCCCT
MA0007.3 Ar LTR5B_89 - 311 327 1.05e-05 0.209 GGGAAGGTAGTGTACCC
MA0007.3 Ar LTR5B_245 - 193 209 1.21e-05 0.209 AGGCACATGCTGTACAG
MA0007.3 Ar LTR5B_307 + 277 293 1.31e-05 0.209 aggtacacagtgcactg
MA0007.3 Ar LTR5B_56 - 18 34 1.34e-05 0.209 GGGAACAGTCTGATCTC
MA0007.3 Ar LTR5B_91 - 187 203 1.59e-05 0.209 AGGCACATCCTGTACAG
MA0007.3 Ar LTR5B_300 - 189 205 1.59e-05 0.209 AGGCACATCCTGTACAG
MA0007.3 Ar LTR5B_132 - 191 207 1.59e-05 0.209 AGGCACATCCTGTACAG
MA0007.3 Ar LTR5B_158 + 270 286 1.73e-05 0.209 gagtacacagtgcactg
MA0007.3 Ar LTR5B_58 - 18 34 1.81e-05 0.209 AGGAACAGTCTGATCTC
MA0007.3 Ar LTR5B_57 - 18 34 1.81e-05 0.209 AGGAACAGTCTGATCTC
MA0007.3 Ar LTR5B_353 + 672 688 1.89e-05 0.209 aggcacagcatgtttcc
MA0007.3 Ar LTR5B_69 - 192 208 1.95e-05 0.209 AGGCACATCTTGTACAG
MA0007.3 Ar LTR5B_353 - 672 688 2.32e-05 0.209 GGAAACATGCTGTGCCT
MA0007.3 Ar LTR5B_232 + 210 226 2.32e-05 0.209 aggcacagtatgtttcc
MA0007.3 Ar LTR5B_89 + 311 327 2.44e-05 0.209 gggtacactaccttccc
MA0007.3 Ar LTR5B_80 + 479 495 2.58e-05 0.209 gggaacagaatgtctcc
MA0007.3 Ar LTR5B_153 - 12 28 2.61e-05 0.209 AGGAACAATCTGATCTC
MA0007.3 Ar LTR5B_307 - 277 293 2.65e-05 0.209 CAGTGCACTGTGTACCT
MA0007.3 Ar LTR5B_183 - 193 209 2.78e-05 0.209 AAGCACATCCTGTACAG
MA0007.3 Ar LTR5B_445 + 169 185 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_137 + 261 277 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_163 + 271 287 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_442 + 272 288 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_176 + 274 290 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_440 + 274 290 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_441 + 274 290 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_17 + 275 291 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_453 + 276 292 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_446 + 278 294 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_462 + 278 294 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_154 + 278 294 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_75 + 278 294 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_329 + 288 304 2.96e-05 0.209 agggacacagtgcactg
MA0007.3 Ar LTR5B_91 + 187 203 3.27e-05 0.209 ctgtacaggatgtgcct
MA0007.3 Ar LTR5B_300 + 189 205 3.27e-05 0.209 ctgtacaggatgtgcct
MA0007.3 Ar LTR5B_132 + 191 207 3.27e-05 0.209 ctgtacaggatgtgcct
MA0007.3 Ar LTR5B_158 - 270 286 3.31e-05 0.209 CAGTGCACTGTGTACTC
MA0007.3 Ar LTR5B_46 + 273 289 3.33e-05 0.209 agggacacgatgcactg
MA0007.3 Ar LTR5B_110 + 275 291 3.33e-05 0.209 agggacacgatgcactg
MA0007.3 Ar LTR5B_430 + 277 293 3.33e-05 0.209 agggacacgatgcactg
MA0007.3 Ar LTR5B_72 + 277 293 3.33e-05 0.209 agggacacgatgcactg
MA0007.3 Ar LTR5B_265 + 278 294 3.33e-05 0.209 agggacacgatgcactg
MA0007.3 Ar LTR5B_232 - 210 226 3.46e-05 0.209 GGAAACATACTGTGCCT
MA0007.3 Ar LTR5B_31 + 278 294 3.48e-05 0.209 agggacacgatgctctg
MA0007.3 Ar LTR5B_80 - 479 495 3.52e-05 0.209 GGAGACATTCTGTTCCC
MA0007.3 Ar LTR5B_56 + 18 34 3.65e-05 0.209 gagatcagactgttccc
MA0007.3 Ar LTR5B_237 + 277 293 3.72e-05 0.209 ggggacacaatgcactg
MA0007.3 Ar LTR5B_191 + 277 293 3.72e-05 0.209 ggggacacaatgcactg
MA0007.3 Ar LTR5B_445 - 576 592 4.15e-05 0.209 GGGAAGGTGCTGTGCCC
MA0007.3 Ar LTR5B_245 + 193 209 4.19e-05 0.209 ctgtacagcatgtgcct
MA0007.3 Ar LTR5B_448 + 214 230 4.27e-05 0.209 agggacaccatgcactg
MA0007.3 Ar LTR5B_468 + 214 230 4.27e-05 0.209 agggacaccatgcactg
MA0007.3 Ar LTR5B_469 + 237 253 4.27e-05 0.209 agggacaccatgcactg
MA0007.3 Ar LTR5B_449 + 237 253 4.27e-05 0.209 agggacaccatgcactg
MA0007.3 Ar LTR5B_53 + 274 290 4.27e-05 0.209 agggacaccatgcactg
MA0007.3 Ar LTR5B_275 + 277 293 4.27e-05 0.209 agggacaccatgcactg
MA0007.3 Ar LTR5B_52 + 278 294 4.27e-05 0.209 agggacaccatgcactg
MA0007.3 Ar LTR5B_353 + 273 289 4.32e-05 0.209 agggacatagtgcactg
MA0007.3 Ar LTR5B_58 + 18 34 4.43e-05 0.209 gagatcagactgttcct
MA0007.3 Ar LTR5B_57 + 18 34 4.43e-05 0.209 gagatcagactgttcct
MA0007.3 Ar LTR5B_48 + 509 525 4.61e-05 0.209 gggaacagaatgtctca
MA0007.3 Ar LTR5B_69 + 192 208 4.64e-05 0.209 ctgtacaagatgtgcct
MA0007.3 Ar LTR5B_39 + 500 516 4.67e-05 0.209 gggaacagaatgtctcg
MA0007.3 Ar LTR5B_61 + 505 521 4.67e-05 0.209 gggaacagaatgtctcg
MA0007.3 Ar LTR5B_31 + 510 526 4.67e-05 0.209 gggaacagaatgtctcg
MA0007.3 Ar LTR5B_80 + 273 289 4.83e-05 0.209 agggacatgatgcactg
MA0007.3 Ar LTR5B_306 + 273 289 4.83e-05 0.209 agggacatgatgcactg
MA0007.3 Ar LTR5B_132 + 276 292 4.83e-05 0.209 agggacatgatgcactg
MA0007.3 Ar LTR5B_78 + 279 295 4.83e-05 0.209 agggacatgatgcactg
MA0007.3 Ar LTR5B_152 + 28 44 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_143 + 28 44 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_142 + 28 44 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_145 + 28 44 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_144 + 28 44 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_283 + 60 76 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_220 + 79 95 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_159 + 180 196 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_286 + 254 270 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_32 + 256 272 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_63 + 261 277 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_244 + 262 278 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_447 + 266 282 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_54 + 267 283 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_248 + 269 285 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_138 + 270 286 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_178 + 271 287 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_236 + 271 287 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_215 + 271 287 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_229 + 272 288 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_219 + 272 288 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_214 + 272 288 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_432 + 273 289 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_50 + 273 289 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_284 + 273 289 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_113 + 273 289 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_425 + 273 289 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_371 + 274 290 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_369 + 274 290 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_340 + 274 290 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_418 + 274 290 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_22 + 274 290 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_250 + 274 290 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_247 + 274 290 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_127 + 274 290 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_241 + 274 290 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_420 + 275 291 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_381 + 275 291 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_185 + 275 291 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_347 + 276 292 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_427 + 276 292 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_416 + 276 292 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_272 + 276 292 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_211 + 276 292 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_240 + 276 292 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_90 + 276 292 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_227 + 276 292 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_187 + 277 293 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_419 + 277 293 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_323 + 277 293 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_238 + 277 293 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_3 + 277 293 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_60 + 277 293 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_208 + 277 293 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_183 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_196 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_55 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_165 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_38 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_358 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_346 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_336 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_328 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_316 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_34 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_278 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_274 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_246 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_245 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_242 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_45 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_460 + 278 294 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_41 + 279 295 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_374 + 279 295 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_281 + 279 295 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_65 + 286 302 4.89e-05 0.209 agggacacaatgcactg
MA0007.3 Ar LTR5B_200 + 682 698 4.89e-05 0.209 gggcacagtacgtttcc
MA0007.3 Ar LTR5B_183 + 193 209 4.92e-05 0.209 ctgtacaggatgtgctt
MA0007.3 Ar LTR5B_233 + 80 96 5.01e-05 0.209 aggggcacaatgtactg
MA0007.3 Ar LTR5B_157 - 675 691 5.01e-05 0.209 GGGAAGGTGCTGTGCCT
MA0007.3 Ar LTR5B_182 - 676 692 5.01e-05 0.209 GGGAAGGTGCTGTGCCT
MA0007.3 Ar LTR5B_338 - 747 763 5.21e-05 0.215 GAGAACAGGGTGAACAG
MA0007.3 Ar LTR5B_31 - 766 782 5.21e-05 0.215 GAGAACAGGGTGAACAG
MA0007.3 Ar LTR5B_216 + 649 665 5.3e-05 0.215 aggcacagcacgtttcc
MA0007.3 Ar LTR5B_218 + 650 666 5.3e-05 0.215 aggcacagcacgtttcc
MA0007.3 Ar LTR5B_139 + 674 690 5.3e-05 0.215 aggcacagcacgtttcc
MA0007.3 Ar LTR5B_153 + 12 28 5.33e-05 0.215 gagatcagattgttcct
MA0007.3 Ar LTR5B_302 - 168 184 5.43e-05 0.215 AGGAAGGTGCTGTGCCC
MA0007.3 Ar LTR5B_216 - 649 665 5.75e-05 0.215 GGAAACGTGCTGTGCCT
MA0007.3 Ar LTR5B_218 - 650 666 5.75e-05 0.215 GGAAACGTGCTGTGCCT
MA0007.3 Ar LTR5B_139 - 674 690 5.75e-05 0.215 GGAAACGTGCTGTGCCT
MA0007.3 Ar LTR5B_326 + 507 523 5.81e-05 0.215 gggaacgcaatgtctca
MA0007.3 Ar LTR5B_141 - 96 112 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_469 - 640 656 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_449 - 640 656 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_80 - 650 666 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_338 - 661 677 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_131 - 670 686 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_78 - 671 687 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_199 - 673 689 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_63 - 674 690 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_94 - 678 694 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_416 - 680 696 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_430 - 681 697 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_72 - 681 697 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_102 - 682 698 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_309 - 684 700 6.01e-05 0.215 GGGAAGGTACTGTGCCC
MA0007.3 Ar LTR5B_33 + 502 518 6.05e-05 0.215 gggaacagcatgtcttg
MA0007.3 Ar LTR5B_445 + 402 418 6.32e-05 0.215 gggaacggaatgtctcc
MA0007.3 Ar LTR5B_147 + 684 700 6.36e-05 0.215 aggcacagtacgtttcc
MA0007.3 Ar LTR5B_117 - 761 777 6.58e-05 0.215 GAGAACAGCGTGAACAG
MA0007.3 Ar LTR5B_445 + 576 592 6.61e-05 0.215 gggcacagcaccttccc
MA0007.3 Ar LTR5B_72 - 767 783 6.76e-05 0.215 AAGAACAGGGTGAACAG
MA0007.3 Ar LTR5B_133 + 473 489 6.84e-05 0.215 gggaacggagtgtctcg
MA0007.3 Ar LTR5B_297 + 524 540 6.84e-05 0.215 gggaacggagtgtctcg
MA0007.3 Ar LTR5B_200 - 682 698 6.87e-05 0.215 GGAAACGTACTGTGCCC
MA0007.3 Ar LTR5B_356 + 278 294 6.95e-05 0.215 agggacataatgcactg
MA0007.3 Ar LTR5B_414 + 510 526 6.99e-05 0.215 gggaacagaacgtctcc
MA0007.3 Ar LTR5B_134 - 656 672 7.18e-05 0.215 GGGAAGGTACTGTGCCT
MA0007.3 Ar LTR5B_180 - 675 691 7.18e-05 0.215 GGGAAGGTACTGTGCCT
MA0007.3 Ar LTR5B_265 - 675 691 7.18e-05 0.215 GGGAAGGTACTGTGCCT
MA0007.3 Ar LTR5B_298 - 677 693 7.18e-05 0.215 GGGAAGGTATTGTGCCC
MA0007.3 Ar LTR5B_419 - 681 697 7.18e-05 0.215 GGGAAGGTACTGTGCCT
MA0007.3 Ar LTR5B_357 - 682 698 7.18e-05 0.215 GGGAAGGTACTGTGCCT
MA0007.3 Ar LTR5B_396 - 685 701 7.18e-05 0.215 GGGAAGGTACTGTGCCT
MA0007.3 Ar LTR5B_315 - 685 701 7.18e-05 0.215 GGGAAGGTACTGTGCCT
MA0007.3 Ar LTR5B_448 - 214 230 7.22e-05 0.215 CAGTGCATGGTGTCCCT
MA0007.3 Ar LTR5B_468 - 214 230 7.22e-05 0.215 CAGTGCATGGTGTCCCT
MA0007.3 Ar LTR5B_449 - 237 253 7.22e-05 0.215 CAGTGCATGGTGTCCCT
MA0007.3 Ar LTR5B_469 - 237 253 7.22e-05 0.215 CAGTGCATGGTGTCCCT
MA0007.3 Ar LTR5B_53 - 274 290 7.22e-05 0.215 CAGTGCATGGTGTCCCT
MA0007.3 Ar LTR5B_275 - 277 293 7.22e-05 0.215 CAGTGCATGGTGTCCCT
MA0007.3 Ar LTR5B_52 - 278 294 7.22e-05 0.215 CAGTGCATGGTGTCCCT
MA0007.3 Ar LTR5B_396 - 388 404 7.42e-05 0.215 GGGGACGGTCAGTTCTT
MA0007.3 Ar LTR5B_10 - 191 207 7.54e-05 0.215 AGGCACATCCTGCACTG
MA0007.3 Ar LTR5B_445 - 169 185 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_137 - 261 277 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_163 - 271 287 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_442 - 272 288 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_441 - 274 290 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_440 - 274 290 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_176 - 274 290 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_17 - 275 291 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_453 - 276 292 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_446 - 278 294 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_154 - 278 294 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_75 - 278 294 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_462 - 278 294 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_329 - 288 304 7.67e-05 0.215 CAGTGCACTGTGTCCCT
MA0007.3 Ar LTR5B_141 + 96 112 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_302 + 168 184 7.88e-05 0.215 gggcacagcaccttcct
MA0007.3 Ar LTR5B_469 + 640 656 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_449 + 640 656 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_80 + 650 666 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_338 + 661 677 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_131 + 670 686 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_78 + 671 687 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_199 + 673 689 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_63 + 674 690 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_94 + 678 694 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_416 + 680 696 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_430 + 681 697 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_72 + 681 697 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_102 + 682 698 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_309 + 684 700 7.88e-05 0.215 gggcacagtaccttccc
MA0007.3 Ar LTR5B_277 + 274 290 8.01e-05 0.218 aaggacacaatgcactg
MA0007.3 Ar LTR5B_147 - 684 700 8.18e-05 0.221 GGAAACGTACTGTGCCT
MA0007.3 Ar LTR5B_414 - 510 526 8.31e-05 0.224 GGAGACGTTCTGTTCCC
MA0007.3 Ar LTR5B_168 + 497 513 8.36e-05 0.224 aggaacaaaatgtctcg
MA0007.3 Ar LTR5B_31 - 278 294 8.4e-05 0.225 CAGAGCATCGTGTCCCT
MA0007.3 Ar LTR5B_157 + 675 691 8.49e-05 0.225 aggcacagcaccttccc
MA0007.3 Ar LTR5B_182 + 676 692 8.49e-05 0.225 aggcacagcaccttccc
MA0007.3 Ar LTR5B_48 - 509 525 8.68e-05 0.228 TGAGACATTCTGTTCCC
MA0007.3 Ar LTR5B_85 + 273 289 9e-05 0.228 agggacagaatgcactg
MA0007.3 Ar LTR5B_200 + 273 289 9e-05 0.228 agggacagaatgcactg
MA0007.3 Ar LTR5B_139 + 275 291 9e-05 0.228 agggacagaatgcactg
MA0007.3 Ar LTR5B_322 + 278 294 9e-05 0.228 agggacagaatgcactg
MA0007.3 Ar LTR5B_46 - 273 289 9e-05 0.228 CAGTGCATCGTGTCCCT
MA0007.3 Ar LTR5B_110 - 275 291 9e-05 0.228 CAGTGCATCGTGTCCCT
MA0007.3 Ar LTR5B_430 - 277 293 9e-05 0.228 CAGTGCATCGTGTCCCT
MA0007.3 Ar LTR5B_191 - 277 293 9e-05 0.228 CAGTGCATTGTGTCCCC
MA0007.3 Ar LTR5B_72 - 277 293 9e-05 0.228 CAGTGCATCGTGTCCCT
MA0007.3 Ar LTR5B_237 - 277 293 9e-05 0.228 CAGTGCATTGTGTCCCC
MA0007.3 Ar LTR5B_265 - 278 294 9e-05 0.228 CAGTGCATCGTGTCCCT
MA0007.3 Ar LTR5B_211 + 389 405 9.1e-05 0.228 aagaccagactgtcccc
MA0007.3 Ar LTR5B_247 - 387 403 9.1e-05 0.228 GGGAACAGTAAGATCTT
MA0007.3 Ar LTR5B_326 - 507 523 9.1e-05 0.228 TGAGACATTGCGTTCCC
MA0007.3 Ar LTR5B_445 - 402 418 9.15e-05 0.228 GGAGACATTCCGTTCCC
MA0007.3 Ar LTR5B_289 - 685 701 9.29e-05 0.231 GGGAAGGGACTGTGCCT
MA0007.3 Ar LTR5B_262 + 503 519 9.34e-05 0.231 gggaacggcatgtctca
MA0007.3 Ar LTR5B_367 + 278 294 9.59e-05 0.236 ggggacacaacgcactg
DEBUGGING INFORMATION

Command line: 

fimo --oc OUTPUT_fimo MA0007.3.meme LTR5B_sequences.fa

Settings: 


  

    output_directory = OUTPUT_fimo
    MEME file name = MA0007.3.meme
    sequence file name = LTR5B_sequences.fa
  
  

    background file name = --nrdb--
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = false
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 2

This information can be useful in the event you wish to report a problem with the FIMO software.

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