Information for 6-GGTSAGCAGG (Motif 11)

A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G
Reverse Opposite:
T G A C A T G C G C A T A T C G A G T C C G A T A T G C G C T A A T G C A T G C
p-value:1e-251
log p-value:-5.785e+02
Information Content per bp:1.805
Number of Target Sequences with motif380.0
Percentage of Target Sequences with motif85.39%
Number of Background Sequences with motif51.0
Percentage of Background Sequences with motif3.91%
Average Position of motif in Targets541.4 +/- 292.0bp
Average Position of motif in Background397.6 +/- 359.0bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)2.61
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GGTSAGCAGG--
-CACAGCAGGGG
 A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G A C G T A C G T
A C G T T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G

Zic2/MA1629.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGTSAGCAGG---
CTCACAGCAGGGGG
 A C G T A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G A C G T A C G T A C G T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GGTSAGCAGG
DCTCAGCAGG
 A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GGTSAGCAGG---
-CACAGCAGGGGG
 A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G A C G T A C G T A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGTSAGCAGG-----
DCHCAGCAGGRGGCC
 A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

grh/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:GGTSAGCAGG--
----AGCAGGTA
 A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A C G G T A C C G T A A C T G T C A G G C A T G C T A

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGTSAGCAGG---
CCACACAGCAGGAGA
 A C G T A C G T A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGTSAGCAGG---
-CHCAGCRGGRGG
 A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G A C G T A C G T A C G T
A C G T T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

PL0002.1_hlh-2::hlh-3/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGTSAGCAGG-------
NATNAGCAGGTGTTNNN
 A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A A C G T C A G T T C G A T C A G A G T C C G T A A C T G T C A G A C G T A C T G A C G T G A C T T G C A G A T C A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGTSAGCAGG---
GAGCACAGCAGGACA
 A C G T A C G T A T C G T A C G C G A T T A C G C G T A T C A G A T G C C G T A A T C G A C T G A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A