Information for 2-AGAAAYTCCATT (Motif 2)

C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A G C A T C T A G C T A G C G T A T C A G A C G T A G C T A C G T A T G C A C G T
p-value:1e-305
log p-value:-7.040e+02
Information Content per bp:1.857
Number of Target Sequences with motif381.0
Percentage of Target Sequences with motif85.62%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets343.8 +/- 278.0bp
Average Position of motif in Background418.5 +/- 149.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.81
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

sd/dmmpmm(Bigfoot)/fly

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGAAAYTCCATT-
-CAAATTTCATTT
 C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T A C G T
A C G T T A G C T C G A G C T A C G T A G A C T C A G T G A C T T A G C G C T A G C A T C G A T A C G T

Pp_0237(RRM)/Physcomitrella_patens-RNCMPT00237-PBM/HughesRNA

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:AGAAAYTCCATT
----ACTCCATC
 C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C A C G T A G T C A G T C C G T A C G A T G T A C

sd/dmmpmm(SeSiMCMC)/fly

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGAAAYTCCATT-
TCGAATTTCNTTG
 C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T A C G T
C G A T T A G C T C A G G T C A C T G A G C A T C A G T G A C T T G A C C G T A C G A T C G A T A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGAAAYTCCATT
--GCATTCCAGN
 C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T
A C G T A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G

AT2G40260/MA1385.1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGAAAYTCCATT
TTAAAATATTCTTTT
 A C G T A C G T A C G T C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T
G C A T G C A T G C T A C G T A G C T A C G T A G A C T C G T A A C G T C G A T A G T C A G C T G A C T G A C T G C A T

MYR2/MA1168.1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGAAAYTCCATT
NAGAAGATTCTNTT
 A C G T A C G T C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T
G C T A C T G A C T A G G C T A C G T A A C T G C G T A C G A T C A G T G T A C A G C T G A C T G C A T G C A T

MOD(RRM)/Drosophila_melanogaster-RNCMPT00140-PBM/HughesRNA

Match Rank:7
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:AGAAAYTCCATT
-----TTCCACT
 C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G T C A G T C C G T A G A T C A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGAAAYTCCATT---
TACGAGACTCCTCTAAC
 A C G T A C G T C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGAAAYTCCATT--
GGCAAAAGTCCAATAA
 A C G T A C G T C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGAAAYTCCATT
--AGATTCYH--
 C G T A T A C G C G T A T C G A C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T
A C G T A C G T C T G A C A T G G C T A G C A T A C G T G T A C A G C T G C T A A C G T A C G T