Information for 6-GCACATCC (Motif 23)

A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C
Reverse Opposite:
A C T G A C T G G T C A A C G T A C T G A C G T A C T G A T G C
p-value:1e-215
log p-value:-4.974e+02
Information Content per bp:1.923
Number of Target Sequences with motif337.0
Percentage of Target Sequences with motif75.73%
Number of Background Sequences with motif36.4
Percentage of Background Sequences with motif2.79%
Average Position of motif in Targets331.6 +/- 221.0bp
Average Position of motif in Background437.2 +/- 348.9bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)2.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEC-8(RRM)/Caenorhabditis_elegans-RNCMPT00181-PBM/HughesRNA

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GCACATCC
NTGCACA---
 A C G T A C G T A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C
C G T A C G A T A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T

CPO(RRM)/Drosophila_melanogaster-RNCMPT00133-PBM/HughesRNA

Match Rank:2
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GCACATCC
NTGCACA---
 A C G T A C G T A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C
C T G A G C A T A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T

NCU08034(RRM)/Neurospora_crassa-RNCMPT00209-PBM/HughesRNA

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GCACATCC
TAGCACAN--
 A C G T A C G T A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C
C G A T C G T A A C T G A G T C C G T A A G T C C T G A T C G A A C G T A C G T

SNRPA(RRM)/Homo_sapiens-RNCMPT00071-PBM/HughesRNA

Match Rank:4
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCACATCC
TTGCACA---
 A C G T A C G T A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C
C G A T C G A T A C T G A G T C C G T A A G T C C T G A A C G T A C G T A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:5
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GCACATCC---
ACCACATCCTGT
 A C G T A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C A C G T A C G T A C G T
T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T

PFI1695c(RRM)/Plasmodium_falciparum-RNCMPT00203-PBM/HughesRNA

Match Rank:6
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCACATCC
CCAGCACA---
 A C G T A C G T A C G T A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C
A G T C A G T C C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T

AFT2/MA0270.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCACATCC-
-CACACCCC
 A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C A C G T
A C G T A T G C C T G A A G T C C G T A A G T C A G T C A G T C A T G C

ZNF341/MA1655.1/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCACATCC--
GGGAACAGCCAC
 A C G T A C G T A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C A C G T A C G T
C A T G C T A G T A C G T G C A C T G A A T G C T C G A A T C G A T G C G T A C T C G A T A G C

ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GCACATCC-
GGAACAGCCG
 A C G T A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C A C G T
C T A G A C T G T G C A G T C A A T G C C G T A A T C G A T G C A G T C C T A G

INO2/INO2_YPD/1-INO4,2-INO2(Harbison)/Yeast

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCACATCC
-CACATGC
 A T C G A G T C C G T A A G T C C G T A A C G T A G T C G T A C
A C G T A T G C G C T A T A G C T C G A C G A T C T A G A T G C