Information for 20-RAAGWCAT (Motif 35)

C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C G T A A G T C A C G T A C G T A G C T
p-value:1e-178
log p-value:-4.107e+02
Information Content per bp:1.903
Number of Target Sequences with motif283.0
Percentage of Target Sequences with motif63.60%
Number of Background Sequences with motif21.8
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets236.6 +/- 41.1bp
Average Position of motif in Background463.3 +/- 155.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-RAAGWCAT
AAAAGTCAA
 A C G T C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

tll/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:RAAGWCAT
AAAGTCA-
 C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T
C T G A T C G A C T G A C T A G A G C T A G T C T C G A A C G T

tll/MA0459.1/Jaspar

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-RAAGWCAT-
AAAAGTCAAA
 A C G T C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T A C G T
C G T A C T G A C G T A T C G A A C T G A G C T A G T C C G T A C G T A G T C A

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---RAAGWCAT----
AGGGAAGTCATTTCT
 A C G T A C G T A C G T C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

tll/dmmpmm(Noyes)/fly

Match Rank:5
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----RAAGWCAT---
ACNAAAAGTCAAANN
 A C G T A C G T A C G T A C G T C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T A C G T A C G T A C G T
T C G A A T G C A C G T C G T A C T G A G T C A T G C A C T A G A G C T A G T C C G T A C G T A G T C A G A T C G T A C

tll/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:RAAGWCAT
AAAGTCAA
 C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T
C T G A T C G A C T G A C T A G G A C T A G T C T C G A C T G A

TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:RAAGWCAT
GACGTCAT
 C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T
A C T G C T G A A G T C C T A G A C G T G T A C C G T A A G C T

WRKY50/MA1317.1/Jaspar

Match Rank:8
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---RAAGWCAT--
NAAAAAGTCAAAN
 A C G T A C G T A C G T C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T A C G T A C G T
C G T A G C T A C T G A C G T A C G T A C T G A A C T G A G C T A G T C C G T A G C T A G T C A C T A G

WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:RAAGWCAT--
AAAGTCAACG
 C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T A C G T A C G T
C T G A C G T A C T G A A C T G A C G T A G T C C G T A C G T A G T A C C T A G

WRKY17/MA1299.1/Jaspar

Match Rank:10
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--RAAGWCAT----
AAAAAGTCAACGCC
 A C G T A C G T C T G A C G T A C G T A A C T G C G A T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T G C A G T C A T C G A C T G A C G T A A C T G A G C T A G T C C T G A C G T A T G A C C T A G T A G C G A T C