Information for 3-AGRGGRAGGCCY (Motif 4)

C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T
Reverse Opposite:
C T G A A C T G C T A G A G T C G T A C G C A T A G C T G A T C A T G C A G T C A G T C C G A T
p-value:1e-299
log p-value:-6.887e+02
Information Content per bp:1.622
Number of Target Sequences with motif395.0
Percentage of Target Sequences with motif88.76%
Number of Background Sequences with motif24.8
Percentage of Background Sequences with motif1.90%
Average Position of motif in Targets495.9 +/- 309.7bp
Average Position of motif in Background464.9 +/- 243.0bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)3.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PCBP2(KH)/Homo_sapiens-RNCMPT00044-PBM/HughesRNA

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGRGGRAGGCCY
--GGGAAGG---
 C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T
A C G T A C G T C A T G A C T G C T A G C T G A C T G A C T A G C T A G A C G T A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGRGGRAGGCCY
TGGGGAAGGGCM
 C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

RO3G_00049(RRM)/Rhizopus_oryzae-RNCMPT00205-PBM/HughesRNA

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGRGGRAGGCCY
AGGGGAA-----
 C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T
C T G A C A T G A C T G A C T G A C T G C T G A C G T A A C G T A C G T A C G T A C G T A C G T

SeqBias: GA-repeat

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGRGGRAGGCCY
GAGAGAGAGA---
 A C G T C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T
C T A G C T G A C T A G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C G T A C G T A C G T

RGM1/MA0366.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGRGGRAGGCCY
AGGGG-------
 C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T
C G T A A C T G A C T G A C T G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ARF10/MA1685.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGRGGRAGGCCY-
CTAATGGGAGACACG
 A C G T A C G T C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T A C G T
T G A C G A C T T G C A T C G A G A C T T C A G C T A G T A C G T C G A T C A G T C G A T A G C T C G A G T A C A T C G

Trl/MA0205.2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGRGGRAGGCCY
GAAAGAGAGAGA---
 A C G T A C G T A C G T C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T
T C A G T C G A T C G A G C T A C A T G C G T A A T C G T G C A C T A G T G C A T C A G T C G A A C G T A C G T A C G T

MSN4(MacIsaac)/Yeast

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGRGGRAGGCCY
AAGGGGG------
 A C G T C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T
T G C A T C G A C T A G A C T G C T A G C A T G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00088-PBM/HughesRNA

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGRGGRAGGCCY
AGAGAGG-----
 C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T
G T C A C T A G C T G A C T A G C T G A T C A G T C A G A C G T A C G T A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGRGGRAGGCCY
GGAGGGGGAA----
 A C G T A C G T C G T A T C A G T C A G T A C G C T A G T C G A C G T A C A T G C T A G G A T C T G A C G A C T
A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T A C G T A C G T A C G T