Information for 18-GCAYAGWACCTT (Motif 18)

C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T
Reverse Opposite:
C G T A T C G A C T A G C A T G C A G T C G T A A G T C C A G T T C G A A C G T C T A G A G T C
p-value:1e-25
log p-value:-5.894e+01
Information Content per bp:1.823
Number of Target Sequences with motif296.0
Percentage of Target Sequences with motif66.52%
Number of Background Sequences with motif121.9
Percentage of Background Sequences with motif30.52%
Average Position of motif in Targets517.1 +/- 152.9bp
Average Position of motif in Background3296858.8 +/- 4298078.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEC-8(RRM)/Caenorhabditis_elegans-RNCMPT00181-PBM/HughesRNA

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCAYAGWACCTT
NTGCACA-------
 A C G T A C G T C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T
C G T A C G A T A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CPO(RRM)/Drosophila_melanogaster-RNCMPT00133-PBM/HughesRNA

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCAYAGWACCTT
NTGCACA-------
 A C G T A C G T C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T
C T G A G C A T A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NCU08034(RRM)/Neurospora_crassa-RNCMPT00209-PBM/HughesRNA

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCAYAGWACCTT
TAGCACAN------
 A C G T A C G T C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T
C G A T C G T A A C T G A G T C C G T A A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Tb_0216(RRM)/Trypanosoma_brucei-RNCMPT00216-PBM/HughesRNA

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCAYAGWACCTT
-CATTGTN----
 C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T
A C G T A G T C C G T A A C G T C G A T A C T G A C G T C G T A A C G T A C G T A C G T A C G T

HNF4G/MA0484.2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAYAGWACCTT
TCCAAAGTCCAGA
 A C G T C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T
C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A

HNF4A/MA0114.4/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAYAGWACCTT
TCCAAAGTCCAAA
 A C G T C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T
C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GCAYAGWACCTT
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

SNRPA(RRM)/Homo_sapiens-RNCMPT00071-PBM/HughesRNA

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCAYAGWACCTT
TTGCACA-------
 A C G T A C G T C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T
C G A T C G A T A C T G A G T C C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GCAYAGWACCTT
----AGAATCTT
 C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T
A C G T A C G T A C G T A C G T T C G A A C T G G T C A C G T A A C G T G T A C C G A T C A G T

Pp_0206(RRM)/Physcomitrella_patens-RNCMPT00206-PBM/HughesRNA

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GCAYAGWACCTT-
-----NAACCTTT
 C T A G A G T C C G T A A G C T G T C A C T A G G C A T G T C A G T A C G A T C A G C T C G A T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C T G A C G T A G T A C G T A C A C G T C G A T C A G T