Information for 2-CCTTAAACTTAT (Motif 2)

G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T
Reverse Opposite:
C G T A G A C T G T C A C T G A C T A G A C G T A G C T A G C T C T G A C T G A C T A G C T A G
p-value:1e-47
log p-value:-1.088e+02
Information Content per bp:1.786
Number of Target Sequences with motif230.0
Percentage of Target Sequences with motif51.69%
Number of Background Sequences with motif30.3
Percentage of Background Sequences with motif7.59%
Average Position of motif in Targets658.9 +/- 121.0bp
Average Position of motif in Background4268578.8 +/- 4335258.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR6A1/MA1541.1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CCTTAAACTTAT-
NTGACCTTGAACTTGAN
 A C G T A C G T A C G T A C G T G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T A C G T
G C A T G A C T T C A G T G C A G T A C G T A C C A G T G C A T T C A G T C G A G T C A G T A C A C G T G A C T T A C G T C G A T G A C

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CCTTAAACTTAT
TGACCTTGACCT---
 A C G T A C G T A C G T G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T

EXC-7(RRM)/Caenorhabditis_elegans-RNCMPT00014-PBM/HughesRNA

Match Rank:3
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:CCTTAAACTTAT
-----AACTTAA
 G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T
A C G T A C G T A C G T A C G T A C G T C G T A C G T A G T A C G A C T G A C T C G T A C T G A

ct/MA0218.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCTTAAACTTAT
--TTGAAC----
 G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T
A C G T A C G T A G C T G A C T C T A G C G T A C G T A A T G C A C G T A C G T A C G T A C G T

Ct/dmmpmm(Noyes_hd)/fly

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCTTAAACTTAT
GCTTGAACAA--
 G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T
A C G T A T G C A G C T G A C T C T A G C G T A C G T A A T G C A C G T A C G T A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CCTTAAACTTAT
---TGAACTCA-
 G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T
A C G T A C G T A C G T A G C T C T A G G T C A T G C A T G A C G A C T A G T C C T G A A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCTTAAACTTAT
TGACCTTGACCT---
 A C G T A C G T A C G T G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T

br-Z3/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCTTAAACTTAT
---AAAACAAAA
 G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T
A C G T A C G T A C G T C G A T C G T A C G T A C G T A A G T C C G A T C G A T C T A G C G A T

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTAAACTTAT
GCTGACCTTGAACTN--
 A C G T A C G T A C G T A C G T A C G T G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T

NR1I3/MA1534.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCTTAAACTTAT
--ATGAACTTT-
 G A T C G A T C A G C T A G C T T C G A C T G A T G C A A G T C G A C T C A G T C T G A G C A T
A C G T A C G T C T G A G A C T T C A G G T C A G T C A A G T C A G C T G A C T G C A T A C G T