Information for 18-AAGAGAGATC (Motif 29)

C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A G T C A C G T A G T C A C G T A G T C A C G T A C G T
p-value:1e-2
log p-value:-6.431e+00
Information Content per bp:1.530
Number of Target Sequences with motif229.0
Percentage of Target Sequences with motif51.46%
Number of Background Sequences with motif164.2
Percentage of Background Sequences with motif41.11%
Average Position of motif in Targets16.7 +/- 2.5bp
Average Position of motif in Background3820555.4 +/- 4486547.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl/MA0205.2/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--AAGAGAGATC
GAAAGAGAGAGA
 A C G T A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C
T C A G T C G A T C G A G C T A C A T G C G T A A T C G T G C A C T A G T G C A T C A G T C G A

SRSF10(RRM)/Homo_sapiens-RNCMPT00089-PBM/HughesRNA

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AAGAGAGATC
-AGAGAAA--
 C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C
A C G T C G T A C T A G C G T A C T A G C T G A T C G A T C G A A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00088-PBM/HughesRNA

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AAGAGAGATC
-AGAGAGG--
 C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C
A C G T G T C A C T A G C T G A C T A G C T G A T C A G T C A G A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00090-PBM/HughesRNA

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AAGAGAGATC
-AGAGAAA--
 C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C
A C G T C G T A A C T G C G T A C T A G C G T A T G C A T G C A A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00019-PBM/HughesRNA

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AAGAGAGATC
-AGAGAAA--
 C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C
A C G T C G T A C T A G C G T A C T A G G T C A T G C A T G C A A C G T A C G T

kni/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AAGAGAGATC
AAATGAGATC
 C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C
C T G A T C G A C G T A A C G T A C T G T G C A C T A G G T C A G C A T A G T C

ECM23/MA0293.1/Jaspar

Match Rank:7
Score:0.69
Offset:3
Orientation:forward strand
Alignment:AAGAGAGATC----
---AAAGATCTAAA
 C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T G C A T G C A C T A G C G T A C G A T A G T C A G C T G C T A T C G A T G C A

GAT4/MA0302.1/Jaspar

Match Rank:8
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AAGAGAGATC----
---AAAGATCTAAA
 C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G C T A C T G A C T A G C G T A A C G T A G T C G A C T T C G A T G C A G T C A

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AAGAGAGATC
RGAGAGAG---
 A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C
C T A G T C A G C T G A T C A G T G C A A C T G T C G A T C A G A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AAGAGAGATC-----
GACAGAGATATCAGTGT
 A C G T A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T