Information for 3-TACGTGCACATC (Motif 3)

A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C
Reverse Opposite:
C T A G C G T A A C G T A C T G A G C T A C T G A G T C C G T A A G T C T C A G G A C T C G T A
p-value:1e-45
log p-value:-1.039e+02
Information Content per bp:1.935
Number of Target Sequences with motif246.0
Percentage of Target Sequences with motif55.28%
Number of Background Sequences with motif43.0
Percentage of Background Sequences with motif10.75%
Average Position of motif in Targets633.5 +/- 121.3bp
Average Position of motif in Background3567290.6 +/- 4343670.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0026.1_Gm397_1/Jaspar

Match Rank:1
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---TACGTGCACATC--
NNGTATGTGCACATNNN
 A C G T A C G T A C G T A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---TACGTGCACATC--
NTNTATGTGCACATNNN
 A C G T A C G T A C G T A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

CPO(RRM)/Drosophila_melanogaster-RNCMPT00133-PBM/HughesRNA

Match Rank:3
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TACGTGCACATC
---NTGCACA--
 A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C
A C G T A C G T A C G T C T G A G C A T A C T G A G T C C G T A A G T C C G T A A C G T A C G T

MEC-8(RRM)/Caenorhabditis_elegans-RNCMPT00181-PBM/HughesRNA

Match Rank:4
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TACGTGCACATC
---NTGCACA--
 A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C
A C G T A C G T A C G T C G T A C G A T A C T G A G T C C G T A A G T C C G T A A C G T A C G T

SNRPA(RRM)/Homo_sapiens-RNCMPT00071-PBM/HughesRNA

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TACGTGCACATC
---TTGCACA--
 A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C
A C G T A C G T A C G T C G A T C G A T A C T G A G T C C G T A A G T C C T G A A C G T A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TACGTGCACATC
GTACGTGCCC---
 A C G T A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C
T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TACGTGCACATC
TACGTGCV----
 A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TACGTGCACATC
RTACGTGC-----
 A C G T A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TACGTGCACATC
GGGTACGTGC-----
 A C G T A C G T A C G T A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TACGTGCACATC
TTWHGGTGCACC--
 A C G T A C G T A C G T C G T A A G T C T C A G A C G T C T A G A G T C C T G A A G T C C G T A A C G T A G T C
G C A T C A G T C G T A G C T A A T C G T C A G C G A T T C A G A G T C C G T A A G T C G T A C A C G T A C G T