Information for 12-GCABTATG (Motif 36)

A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G
Reverse Opposite:
A G T C G T C A A G C T C G T A T C G A A C G T C T A G G T A C
p-value:1e0
log p-value:-0.000e+00
Information Content per bp:1.741
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif323.6
Percentage of Background Sequences with motif81.01%
Average Position of motif in Targets258.0 +/- 27.0bp
Average Position of motif in Background3390564.1 +/- 4470720.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tb_0216(RRM)/Trypanosoma_brucei-RNCMPT00216-PBM/HughesRNA

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GCABTATG
-NACAATG
 A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G
A C G T G C A T C G T A A G T C C G T A C G T A A C G T A C T G

ZNF143/MA0088.2/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GCABTATG----
CAATGCATTGTGGGTA
 A C G T A C G T A C G T A C G T A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G A C G T A C G T A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

MATA1(MacIsaac)/Yeast

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCABTATG-
--ATTGTGC
 A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G A C G T
A C G T A C G T C G T A A C G T A C G T A C T G A C G T A C T G A G C T

HMRA1/MA0327.1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCABTATG-
--ATTGTGC
 A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G A C G T
A C G T A C G T C G T A A C G T A C G T A C T G A C G T A C T G A G C T

AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCABTATG
CGAATTAT-
 A C G T A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G
G A T C C T A G G T C A T C G A A C G T G C A T C G T A G C A T A C G T

NEUROD2/MA0668.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCABTATG--
GCCATATGGT
 A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G A C G T A C G T
T C A G T G A C A T G C C T G A A G C T T G C A A G C T A C T G A C T G G A C T

CG7804(RRM)/Drosophila_melanogaster-RNCMPT00146-PBM/HughesRNA

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCABTATG-
--AGTGTGG
 A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G A C G T
A C G T A C G T C G T A A C T G A C G T C T A G C G A T A C T G C T A G

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCABTATG--
RCCATMTGTT
 A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G A C G T A C G T
C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T

cad/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCABTATG
--TTTATG
 A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G

TCF21(var.2)/MA1568.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCABTATG---
CACCATATGGCG
 A C G T A C T G A G T C T G C A A G C T C G A T C T G A A C G T A C T G A C G T A C G T A C G T
A G T C C T G A T A G C T A G C C T G A A C G T T C G A G A C T C A T G A C T G G A T C T C A G