Information for 13-TAAAACCCGA (Motif 13)

A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A
Reverse Opposite:
C A G T A G T C C T A G C T A G C T A G G A C T C G A T A C G T G A C T C G T A
p-value:1e-422
log p-value:-9.734e+02
Information Content per bp:1.929
Number of Target Sequences with motif198.0
Percentage of Target Sequences with motif41.95%
Number of Background Sequences with motif64.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets133.6 +/- 18.2bp
Average Position of motif in Background107.4 +/- 67.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX2/MA1119.1/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TAAAACCCGA---
AACTGAAACCTGATAC
 A C G T A C G T A C G T A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A A C G T A C G T A C G T
G C T A G C T A T G A C C G A T C A T G G C T A G T C A C T G A G A T C G T A C G C A T C T A G C G T A A C G T G T C A G A T C

Prdm15/MA1616.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TAAAACCCGA---
AGGAAAACCTGGAGC
 A C G T A C G T A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A A C G T A C G T A C G T
C T G A C T A G A C T G T C G A T C G A C T G A C T G A A G T C T G A C G A C T C T A G C T A G T G C A T C A G G A T C

PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TAAAACCCGA------
-AAAACCTGGANHGGR
 A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T G A T C G A T C G A A G T C T G A C G A C T A C T G C T A G G T C A T A G C G C A T T C A G C T A G T C A G

SIX1/MA1118.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TAAAACCCGA--
-GTAACCTGATA
 A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A A C G T A C G T
A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TAAAACCCGA
NGYCATAAAWCH---
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------TAAAACCCGA
CTACCAATAAAATTCT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TAAAACCCGA
CYHATAAAAN----
 A C G T A C G T A C G T A C G T A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T A C G T A C G T

HOXA13/MA0650.2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TAAAACCCGA
CCCAATAAAAC----
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TAAAACCCGA
NCYAATAAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

CDX4/MA1473.1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TAAAACCCGA
GGCAATAAAAC----
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A G T C A C G T A C T G A A G T C G A T C A G T C C T A G G C T A
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C A C G T A C G T A C G T A C G T